Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database

por Vishnyakova, Dina, Pasche, Emilie, Ruch, Patrick
Publicado 2012

Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot

por Ehrler, Frédéric, Geissbühler, Antoine, Jimeno, Antonio, Ruch, Patrick
Publicado 2005

Automatic medical encoding with SNOMED categories

por Ruch, Patrick, Gobeill, Julien, Lovis, Christian, Geissbühler, Antoine
Publicado 2008

Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases

por Gobeill, Julien, Pasche, Emilie, Vishnyakova, Dina, Ruch, Patrick
Publicado 2013

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification

por Gobeill, Julien, Pasche, Emilie, Vishnyakova, Dina, Ruch, Patrick
Publicado 2014

Mapping proteins to disease terminologies: from UniProt to MeSH

por Mottaz, Anaïs, Yip, Yum L, Ruch, Patrick, Veuthey, Anne-Lise
Publicado 2008

Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora

por Naderi, Nona, Knafou, Julien, Copara, Jenny, Ruch, Patrick, Teodoro, Douglas
Publicado 2021

Building a Transnational Biosurveillance Network Using Semantic Web Technologies: Requirements, Design, and Preliminary Evaluation

por Teodoro, Douglas, Pasche, Emilie, Gobeill, Julien, Emonet, Stéphane, Ruch, Patrick, Lovis, Christian
Publicado 2012

Improving average ranking precision in user searches for biomedical research datasets

por Teodoro, Douglas, Mottin, Luc, Gobeill, Julien, Gaudinat, Arnaud, Vachon, Thérèse, Ruch, Patrick
Publicado 2017

ORBDA: An openEHR benchmark dataset for performance assessment of electronic health record servers

por Teodoro, Douglas, Sundvall, Erik, João Junior, Mario, Ruch, Patrick, Miranda Freire, Sergio
Publicado 2018

Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction

por Gobeill, Julien, Tbahriti, Imad, Ehrler, Frédéric, Mottaz, Anaïs, Veuthey, Anne-Lise, Ruch, Patrick
Publicado 2008

SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts

por Gobeill, Julien, Caucheteur, Déborah, Michel, Pierre-André, Mottin, Luc, Pasche, Emilie, Ruch, Patrick
Publicado 2020

Variomes: a high recall search engine to support the curation of genomic variants

por Pasche, Emilie, Mottaz, Anaïs, Caucheteur, Déborah, Gobeill, Julien, Michel, Pierre-André, Ruch, Patrick
Publicado 2022

Deep Question Answering for protein annotation

por Gobeill, Julien, Gaudinat, Arnaud, Pasche, Emilie, Vishnyakova, Dina, Gaudet, Pascale, Bairoch, Amos, Ruch, Patrick
Publicado 2015

Assessing the use of supplementary materials to improve genomic variant discovery

por Pasche, Emilie, Mottaz, Anaïs, Gobeill, Julien, Michel, Pierre-André, Caucheteur, Déborah, Naderi, Nona, Ruch, Patrick
Publicado 2023

Development and tuning of an original search engine for patent libraries in medicinal chemistry

por Pasche, Emilie, Gobeill, Julien, Kreim, Olivier, Oezdemir-Zaech, Fatma, Vachon, Therese, Lovis, Christian, Ruch, Patrick
Publicado 2014

neXtA(5): accelerating annotation of articles via automated approaches in neXtProt

por Mottin, Luc, Gobeill, Julien, Pasche, Emilie, Michel, Pierre-André, Cusin, Isabelle, Gaudet, Pascale, Ruch, Patrick
Publicado 2016

UPCLASS: a deep learning-based classifier for UniProtKB entry publications

por Teodoro, Douglas, Knafou, Julien, Naderi, Nona, Pasche, Emilie, Gobeill, Julien, Arighi, Cecilia N, Ruch, Patrick
Publicado 2020

Assisted Knowledge Discovery for the Maintenance of Clinical Guidelines

por Pasche, Emilie, Ruch, Patrick, Teodoro, Douglas, Huttner, Angela, Harbarth, Stephan, Gobeill, Julien, Wipfli, Rolf, Lovis, Christian
Publicado 2013

Correction: Assisted Knowledge Discovery for the Maintenance of Clinical Guidelines

por Pasche, Emilie, Ruch, Patrick, Teodoro, Douglas, Huttner, Angela, Harbarth, Stephan, Gobeill, Julien, Wipfli, Rolf, Lovis, Christian
Publicado 2013