The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission

por Ruis, Christopher, Roy, Sunando, Brown, Julianne R., Allen, David J., Goldstein, Richard A., Breuer, Judith
Publicado 2017

A molnupiravir-associated mutational signature in global SARS-CoV-2 genomes

por Sanderson, Theo, Hisner, Ryan, Donovan-Banfield, I’ah, Hartman, Hassan, Løchen, Alessandra, Peacock, Thomas P., Ruis, Christopher
Publicado 2023

Impact of transient acquired hypermutability on the inter- and intra-species competitiveness of Pseudomonas aeruginosa

por On, Yue Yuan, Figueroa, Wendy, Fan, Catherine, Ho, Pok-Man, Bényei, Éva Bernadett, Weimann, Aaron, Ruis, Christopher, Floto, Andres R., Welch, Martin
Publicado 2023

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

por Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
Publicado 2020

Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

por Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
Publicado 2021

Dissemination of Mycobacterium abscessus via global transmission networks

por Ruis, Christopher, Bryant, Josephine M., Bell, Scott C., Thomson, Rachel, Davidson, Rebecca M., Hasan, Nabeeh A., van Ingen, Jakko, Strong, Michael, Floto, R. Andres, Parkhill, Julian
Publicado 2021

Mutational spectra are associated with bacterial niche

por Ruis, Christopher, Weimann, Aaron, Tonkin-Hill, Gerry, Pandurangan, Arun Prasad, Matuszewska, Marta, Murray, Gemma G. R., Lévesque, Roger C., Blundell, Tom L., Floto, R. Andres, Parkhill, Julian
Publicado 2023

Preadaptation of pandemic GII.4 noroviruses in unsampled virus reservoirs years before emergence

por Ruis, Christopher, Lindesmith, Lisa C, Mallory, Michael L, Brewer-Jensen, Paul D, Bryant, Josephine M, Costantini, Veronica, Monit, Christopher, Vinjé, Jan, Baric, Ralph S, Goldstein, Richard A, Breuer, Judith
Publicado 2020

A lung-specific mutational signature enables inference of viral and bacterial respiratory niche

por Ruis, Christopher, Peacock, Thomas P., Polo, Luis M., Masone, Diego, Alvarez, Maria Soledad, Hinrichs, Angie S., Turakhia, Yatish, Cheng, Ye, McBroome, Jakob, Corbett-Detig, Russell, Parkhill, Julian, Floto, R. Andres
Publicado 2023

Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America

por Gutierrez, Bernardo, Castelán Sánchez, Hugo G., Candido, Darlan da Silva, Jackson, Ben, Fleishon, Shay, Houzet, Renaud, Ruis, Christopher, Delaye, Luis, Faria, Nuno R., Rambaut, Andrew, Pybus, Oliver G., Escalera-Zamudio, Marina
Publicado 2022

Positive selection in dNTPase SAMHD1 throughout mammalian evolution

por Monit, Christopher, Morris, Elizabeth R., Ruis, Christopher, Szafran, Bart, Thiltgen, Grant, Tsai, Ming-Han Chloe, Mitchison, N. Avrion, Bishop, Kate N., Stoye, Jonathan P., Taylor, Ian A., Fassati, Ariberto, Goldstein, Richard A.
Publicado 2019

Producing polished prokaryotic pangenomes with the Panaroo pipeline

por Tonkin-Hill, Gerry, MacAlasdair, Neil, Ruis, Christopher, Weimann, Aaron, Horesh, Gal, Lees, John A., Gladstone, Rebecca A., Lo, Stephanie, Beaudoin, Christopher, Floto, R. Andres, Frost, Simon D.W., Corander, Jukka, Bentley, Stephen D., Parkhill, Julian
Publicado 2020

Deep sequencing reveals persistence of cell-associated mumps vaccine virus in chronic encephalitis

por Morfopoulou, Sofia, Mee, Edward T., Connaughton, Sarah M., Brown, Julianne R., Gilmour, Kimberly, Chong, WK ‘Kling’, Duprex, W. Paul, Ferguson, Deborah, Hubank, Mike, Hutchinson, Ciaran, Kaliakatsos, Marios, McQuaid, Stephen, Paine, Simon, Plagnol, Vincent, Ruis, Christopher, Virasami, Alex, Zhan, Hong, Jacques, Thomas S., Schepelmann, Silke, Qasim, Waseem, Breuer, Judith
Publicado 2016

A comprehensive characterization of chronic norovirus infection in immunodeficient hosts

por Brown, Li-An K., Ruis, Christopher, Clark, Ian, Roy, Sunando, Brown, Julianne R., Albuquerque, Adriana S., Patel, Smita Y., Miller, Joanne, Karim, Mohammed Yousuf, Dervisevic, Samir, Moore, Jennifer, Williams, Charlotte A., Cudini, Juliana, Moreira, Fernando, Neild, Penny, Seneviratne, Suranjith L., Workman, Sarita, Toumpanakis, Christos, Atkinson, Claire, Burns, Siobhan O., Breuer, Judith, Lowe, David M.
Publicado 2019

Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence

por Kraemer, Moritz U. G., Hill, Verity, Ruis, Christopher, Dellicour, Simon, Bajaj, Sumali, McCrone, John T., Baele, Guy, Parag, Kris V., Battle, Anya Lindström, Gutierrez, Bernardo, Jackson, Ben, Colquhoun, Rachel, O’Toole, Áine, Klein, Brennan, Vespignani, Alessandro, Volz, Erik, Faria, Nuno R., Aanensen, David M., Loman, Nicholas J., du Plessis, Louis, Cauchemez, Simon, Rambaut, Andrew, Scarpino, Samuel V., Pybus, Oliver G.
Publicado 2021

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

por du Plessis, Louis, McCrone, John T., Zarebski, Alexander E., Hill, Verity, Ruis, Christopher, Gutierrez, Bernardo, Raghwani, Jayna, Ashworth, Jordan, Colquhoun, Rachel, Connor, Thomas R., Faria, Nuno R., Jackson, Ben, Loman, Nicholas J., O’Toole, Áine, Nicholls, Samuel M., Parag, Kris V., Scher, Emily, Vasylyeva, Tetyana I., Volz, Erik M., Watts, Alexander, Bogoch, Isaac I., Khan, Kamran, Aanensen, David M., Kraemer, Moritz U. G., Rambaut, Andrew, Pybus, Oliver G.
Publicado 2021

Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis

por Beale, Mathew A., Marks, Michael, Cole, Michelle J., Lee, Min-Kuang, Pitt, Rachel, Ruis, Christopher, Balla, Eszter, Crucitti, Tania, Ewens, Michael, Fernández-Naval, Candela, Grankvist, Anna, Guiver, Malcolm, Kenyon, Chris R., Khairullin, Rafil, Kularatne, Ranmini, Arando, Maider, Molini, Barbara J., Obukhov, Andrey, Page, Emma E., Petrovay, Fruzsina, Rietmeijer, Cornelis, Rowley, Dominic, Shokoples, Sandy, Smit, Erasmus, Sweeney, Emma L., Taiaroa, George, Vera, Jaime H., Wennerås, Christine, Whiley, David M., Williamson, Deborah A., Hughes, Gwenda, Naidu, Prenilla, Unemo, Magnus, Krajden, Mel, Lukehart, Sheila A., Morshed, Muhammad G., Fifer, Helen, Thomson, Nicholas R.
Publicado 2021

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

por McCrone, John T., Hill, Verity, Bajaj, Sumali, Pena, Rosario Evans, Lambert, Ben C., Inward, Rhys, Bhatt, Samir, Volz, Erik, Ruis, Christopher, Dellicour, Simon, Baele, Guy, Zarebski, Alexander E., Sadilek, Adam, Wu, Neo, Schneider, Aaron, Ji, Xiang, Raghwani, Jayna, Jackson, Ben, Colquhoun, Rachel, O’Toole, Áine, Peacock, Thomas P., Twohig, Kate, Thelwall, Simon, Dabrera, Gavin, Myers, Richard, Faria, Nuno R., Huber, Carmen, Bogoch, Isaac I., Khan, Kamran, du Plessis, Louis, Barrett, Jeffrey C., Aanensen, David M., Barclay, Wendy S., Chand, Meera, Connor, Thomas, Loman, Nicholas J., Suchard, Marc A., Pybus, Oliver G., Rambaut, Andrew, Kraemer, Moritz U.G.
Publicado 2021

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

por McCrone, John T., Hill, Verity, Bajaj, Sumali, Pena, Rosario Evans, Lambert, Ben C., Inward, Rhys, Bhatt, Samir, Volz, Erik, Ruis, Christopher, Dellicour, Simon, Baele, Guy, Zarebski, Alexander E., Sadilek, Adam, Wu, Neo, Schneider, Aaron, Ji, Xiang, Raghwani, Jayna, Jackson, Ben, Colquhoun, Rachel, O’Toole, Áine, Peacock, Thomas P., Twohig, Kate, Thelwall, Simon, Dabrera, Gavin, Myers, Richard, Faria, Nuno R., Huber, Carmen, Bogoch, Isaac I., Khan, Kamran, du Plessis, Louis, Barrett, Jeffrey C., Aanensen, David M., Barclay, Wendy S., Chand, Meera, Connor, Thomas, Loman, Nicholas J., Suchard, Marc A., Pybus, Oliver G., Rambaut, Andrew, Kraemer, Moritz U.G.
Publicado 2021

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

por McCrone, John T., Hill, Verity, Bajaj, Sumali, Pena, Rosario Evans, Lambert, Ben C., Inward, Rhys, Bhatt, Samir, Volz, Erik, Ruis, Christopher, Dellicour, Simon, Baele, Guy, Zarebski, Alexander E., Sadilek, Adam, Wu, Neo, Schneider, Aaron, Ji, Xiang, Raghwani, Jayna, Jackson, Ben, Colquhoun, Rachel, O’Toole, Áine, Peacock, Thomas P., Twohig, Kate, Thelwall, Simon, Dabrera, Gavin, Myers, Richard, Faria, Nuno R., Huber, Carmen, Bogoch, Isaac I., Khan, Kamran, du Plessis, Louis, Barrett, Jeffrey C., Aanensen, David M., Barclay, Wendy S., Chand, Meera, Connor, Thomas, Loman, Nicholas J., Suchard, Marc A., Pybus, Oliver G., Rambaut, Andrew, Kraemer, Moritz U. G.
Publicado 2022