Conserved regions in long non-coding RNAs contain abundant translation and protein–RNA interaction signatures

por Ruiz-Orera, Jorge, Albà, M Mar
Publicado 2019

Long non-coding RNAs as a source of new peptides

por Ruiz-Orera, Jorge, Messeguer, Xavier, Subirana, Juan Antonio, Alba, M Mar
Publicado 2014

Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome

por Reixachs-Solé, Marina, Ruiz-Orera, Jorge, Albà, M. Mar, Eyras, Eduardo
Publicado 2020

Impact of uORFs in mediating regulation of translation in stress conditions

por Moro, Simone G., Hermans, Cedric, Ruiz-Orera, Jorge, Albà, M. Mar
Publicado 2021

Multifunctional RNA-binding proteins influence mRNA abundance and translational efficiency of distinct sets of target genes

por Schneider-Lunitz, Valentin, Ruiz-Orera, Jorge, Hubner, Norbert, van Heesch, Sebastiaan
Publicado 2021

Cap analysis of gene expression reveals alternative promoter usage in a rat model of hypertension

por Dahale, Sonal, Ruiz-Orera, Jorge, Silhavy, Jan, Hübner, Norbert, van Heesch, Sebastiaan, Pravenec, Michal, Atanur, Santosh S
Publicado 2022

New Genes and Functional Innovation in Mammals

por Luis Villanueva-Cañas, José, Ruiz-Orera, Jorge, Agea, M. Isabel, Gallo, Maria, Andreu, David, Albà, M. Mar
Publicado 2017

Origins of De Novo Genes in Human and Chimpanzee

por Ruiz-Orera, Jorge, Hernandez-Rodriguez, Jessica, Chiva, Cristina, Sabidó, Eduard, Kondova, Ivanela, Bontrop, Ronald, Marqués-Bonet, Tomàs, Albà, M.Mar
Publicado 2015

Integrative analysis of macrophage ribo-Seq and RNA-Seq data define glucocorticoid receptor regulated inflammatory response genes into distinct regulatory classes

por Ansari, Suhail A., Dantoft, Widad, Ruiz-Orera, Jorge, Syed, Afzal P., Blachut, Susanne, van Heesch, Sebastiaan, Hübner, Norbert, Uhlenhaut, Nina Henriette
Publicado 2022

Uncovering de novo gene birth in yeast using deep transcriptomics

por Blevins, William R., Ruiz-Orera, Jorge, Messeguer, Xavier, Blasco-Moreno, Bernat, Villanueva-Cañas, José Luis, Espinar, Lorena, Díez, Juana, Carey, Lucas B., Albà, M. Mar
Publicado 2021

What can Ribo-seq and proteomics tell us about the non-canonical proteome?

por Prensner, John R., Abelin, Jennifer G., Kok, Leron W., Clauser, Karl R., Mudge, Jonathan M., Ruiz-Orera, Jorge, Bassani-Sternberg, Michal, Deutsch, Eric W., van Heesch, Sebastiaan
Publicado 2023

What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?

por Prensner, John R., Abelin, Jennifer G., Kok, Leron W., Clauser, Karl R., Mudge, Jonathan M., Ruiz-Orera, Jorge, Bassani-Sternberg, Michal, Moritz, Robert L., Deutsch, Eric W., van Heesch, Sebastiaan
Publicado 2023

Dynamic interplay between RPL3- and RPL3L-containing ribosomes modulates mitochondrial activity in the mammalian heart

por Milenkovic, Ivan, Santos Vieira, Helaine Graziele, Lucas, Morghan C, Ruiz-Orera, Jorge, Patone, Giannino, Kesteven, Scott, Wu, Jianxin, Feneley, Michael, Espadas, Guadalupe, Sabidó, Eduard, Hübner, Norbert, van Heesch, Sebastiaan, Völkers, Mirko, Novoa, Eva Maria
Publicado 2023

MDB-32. TRANSLATION OF NON-CANONICAL OPEN READING FRAMES AS A CANCER CELL SURVIVAL MECHANISM IN CHILDHOOD MEDULLOBLASTOMA

por Hofman, Damon, Ruiz-Orera, Jorge, Yannuzzi, Ian, Murugesan, Rakesh, van Dinter, Jip, Clauser, Karl, Condurat, Alexandra, Herman, Amy, Shanmugam, Vignesh, Zhou, Kevin, Vogelzang, Jayne, Wang, Li, Roth, Jennifer, Ligon, Keith, Phoenix, Timothy, Root, David, Golub, Todd, Bandopadhayay, Pratiti, van Heesch, Sebastiaan, Prensner, John
Publicado 2023

TUNAR lncRNA Encodes a Microprotein that Regulates Neural Differentiation and Neurite Formation by Modulating Calcium Dynamics

por Senís, Elena, Esgleas, Miriam, Najas, Sonia, Jiménez-Sábado, Verónica, Bertani, Camilla, Giménez-Alejandre, Marta, Escriche, Alba, Ruiz-Orera, Jorge, Hergueta-Redondo, Marta, Jiménez, Mireia, Giralt, Albert, Nuciforo, Paolo, Albà, M. Mar, Peinado, Héctor, del Toro, Daniel, Hove-Madsen, Leif, Götz, Magdalena, Abad, María
Publicado 2021

A trans locus causes a ribosomopathy in hypertrophic hearts that affects mRNA translation in a protein length-dependent fashion

por Witte, Franziska, Ruiz-Orera, Jorge, Mattioli, Camilla Ciolli, Blachut, Susanne, Adami, Eleonora, Schulz, Jana Felicitas, Schneider-Lunitz, Valentin, Hummel, Oliver, Patone, Giannino, Mücke, Michael Benedikt, Šilhavý, Jan, Heinig, Matthias, Bottolo, Leonardo, Sanchis, Daniel, Vingron, Martin, Chekulaeva, Marina, Pravenec, Michal, Hubner, Norbert, van Heesch, Sebastiaan
Publicado 2021

Naïve-like pluripotency to pave the way for saving the northern white rhinoceros from extinction

por Zywitza, Vera, Rusha, Ejona, Shaposhnikov, Dmitry, Ruiz-Orera, Jorge, Telugu, Narasimha, Rishko, Valentyna, Hayashi, Masafumi, Michel, Geert, Wittler, Lars, Stejskal, Jan, Holtze, Susanne, Göritz, Frank, Hermes, Robert, Wang, Jichang, Izsvák, Zsuzsanna, Colleoni, Silvia, Lazzari, Giovanna, Galli, Cesare, Hildebrandt, Thomas B., Hayashi, Katsuhiko, Diecke, Sebastian, Drukker, Micha
Publicado 2022

pTINCR microprotein promotes epithelial differentiation and suppresses tumor growth through CDC42 SUMOylation and activation

por Boix, Olga, Martinez, Marion, Vidal, Santiago, Giménez-Alejandre, Marta, Palenzuela, Lluís, Lorenzo-Sanz, Laura, Quevedo, Laura, Moscoso, Olivier, Ruiz-Orera, Jorge, Ximénez-Embún, Pilar, Ciriaco, Nikaoly, Nuciforo, Paolo, Stephan-Otto Attolini, Camille, Albà, M. Mar, Muñoz, Javier, Tian, Tian V., Varela, Ignacio, Vivancos, Ana, Ramón y Cajal, Santiago, Muñoz, Purificación, Rivas, Carmen, Abad, María
Publicado 2022

Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames

por Sandmann, Clara-L., Schulz, Jana F., Ruiz-Orera, Jorge, Kirchner, Marieluise, Ziehm, Matthias, Adami, Eleonora, Marczenke, Maike, Christ, Annabel, Liebe, Nina, Greiner, Johannes, Schoenenberger, Aaron, Muecke, Michael B., Liang, Ning, Moritz, Robert L., Sun, Zhi, Deutsch, Eric W., Gotthardt, Michael, Mudge, Jonathan M., Prensner, John R., Willnow, Thomas E., Mertins, Philipp, van Heesch, Sebastiaan, Hubner, Norbert
Publicado 2023

Impairment of the ER/mitochondria compartment in human cardiomyocytes with PLN p.Arg14del mutation

por Cuello, Friederike, Knaust, Anika E, Saleem, Umber, Loos, Malte, Raabe, Janice, Mosqueira, Diogo, Laufer, Sandra, Schweizer, Michaela, van der Kraak, Petra, Flenner, Frederik, Ulmer, Bärbel M, Braren, Ingke, Yin, Xiaoke, Theofilatos, Konstantinos, Ruiz‐Orera, Jorge, Patone, Giannino, Klampe, Birgit, Schulze, Thomas, Piasecki, Angelika, Pinto, Yigal, Vink, Aryan, Hübner, Norbert, Harding, Sian, Mayr, Manuel, Denning, Chris, Eschenhagen, Thomas, Hansen, Arne
Publicado 2021