SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

por Sánchez, Benjamín J., Li, Feiran, Kerkhoven, Eduard J., Nielsen, Jens
Publicado 2019

DebaryOmics: an integrative –omics study to understand the halophilic behaviour of Debaryomyces hansenii

por Navarrete, Clara, Sánchez, Benjamín J., Savickas, Simonas, Martínez, José L.
Publicado 2021

From genotype to phenotype: computational approaches for inferring microbial traits relevant to the food industry

por Karlsen, Signe T, Rau, Martin H, Sánchez, Benjamín J, Jensen, Kristian, Zeidan, Ahmad A
Publicado 2023

Proteome allocations change linearly with the specific growth rate of Saccharomyces cerevisiae under glucose limitation

por Xia, Jianye, Sánchez, Benjamin J., Chen, Yu, Campbell, Kate, Kasvandik, Sergo, Nielsen, Jens
Publicado 2022

Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints

por Sánchez, Benjamín J, Zhang, Cheng, Nilsson, Avlant, Lahtvee, Petri‐Jaan, Kerkhoven, Eduard J, Nielsen, Jens
Publicado 2017

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

por Wang, Hao, Marcišauskas, Simonas, Sánchez, Benjamín J., Domenzain, Iván, Hermansson, Daniel, Agren, Rasmus, Nielsen, Jens, Kerkhoven, Eduard J.
Publicado 2018

Genome-scale modeling drives 70-fold improvement of intracellular heme production in Saccharomyces cerevisiae

por Ishchuk, Olena P., Domenzain, Iván, Sánchez, Benjamín J., Muñiz-Paredes, Facundo, Martínez, José L., Nielsen, Jens, Petranovic, Dina
Publicado 2022

CRI-SPA: a high-throughput method for systematic genetic editing of yeast libraries

por Cachera, Paul, Olsson, Helén, Coumou, Hilde, Jensen, Mads L, Sánchez, Benjamín J, Strucko, Tomas, van den Broek, Marcel, Daran, Jean-Marc, Jensen, Michael K, Sonnenschein, Nikolaus, Lisby, Michael, Mortensen, Uffe H
Publicado 2023

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

por Lu, Hongzhong, Li, Feiran, Sánchez, Benjamín J., Zhu, Zhengming, Li, Gang, Domenzain, Iván, Marcišauskas, Simonas, Anton, Petre Mihail, Lappa, Dimitra, Lieven, Christian, Beber, Moritz Emanuel, Sonnenschein, Nikolaus, Kerkhoven, Eduard J., Nielsen, Jens
Publicado 2019

Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

por Lu, Hongzhong, Li, Feiran, Sánchez, Benjamín J., Zhu, Zhengming, Li, Gang, Domenzain, Iván, Marcišauskas, Simonas, Anton, Petre Mihail, Lappa, Dimitra, Lieven, Christian, Beber, Moritz Emanuel, Sonnenschein, Nikolaus, Kerkhoven, Eduard J., Nielsen, Jens
Publicado 2020

Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism

por Zhang, Jie, Petersen, Søren D., Radivojevic, Tijana, Ramirez, Andrés, Pérez-Manríquez, Andrés, Abeliuk, Eduardo, Sánchez, Benjamín J., Costello, Zak, Chen, Yu, Fero, Michael J., Martin, Hector Garcia, Nielsen, Jens, Keasling, Jay D., Jensen, Michael K.
Publicado 2020

MEMOTE for standardized genome-scale metabolic model testing

por Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J., Schaap, Peter J., Malik Sheriff, Rahuman S., Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith A. H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng
Publicado 2020

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

por Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J., Schaap, Peter J., Sheriff, Rahuman S. Malik, Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith A. H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng
Publicado 2020