CONGA: Copy number variation genotyping in ancient genomes and low-coverage sequencing data

por Söylev, Arda, Çokoglu, Sevim Seda, Koptekin, Dilek, Alkan, Can, Somel, Mehmet
Publicado 2022

MTaxi: A comparative tool for taxon identification of ultra low coverage ancient genomes

por Atağ, Gözde, Vural, Kıvılcım Başak, Kaptan, Damla, Özkan, Mustafa, Koptekin, Dilek, Sağlıcan, Ekin, Doğramacı, Sevcan, Köz, Mevlüt, Yılmaz, Ardan, Söylev, Arda, Togan, İnci, Somel, Mehmet, Özer, Füsun
Publicado 2023

Metabolic independence drives gut microbial colonization and resilience in health and disease

por Watson, Andrea R., Füssel, Jessika, Veseli, Iva, DeLongchamp, Johanna Zaal, Silva, Marisela, Trigodet, Florian, Lolans, Karen, Shaiber, Alon, Fogarty, Emily, Runde, Joseph M., Quince, Christopher, Yu, Michael K., Söylev, Arda, Morrison, Hilary G., Lee, Sonny T. M., Kao, Dina, Rubin, David T., Jabri, Bana, Louie, Thomas, Eren, A. Murat
Publicado 2023

A robust benchmark for detection of germline large deletions and insertions

por Zook, Justin M., Hansen, Nancy F., Olson, Nathan D., Chapman, Lesley M., Mullikin, James C., Xiao, Chunlin, Sherry, Stephen, Koren, Sergey, Phillippy, Adam M., Boutros, Paul C., Sahraeian, Sayed Mohammad E., Huang, Vincent, Rouette, Alexandre, Alexander, Noah, Mason, Christopher E., Hajirasouliha, Iman, Ricketts, Camir, Lee, Joyce, Tearle, Rick, Fiddes, Ian T., Barrio, Alvaro Martinez, Wala, Jeremiah, Carroll, Andrew, Ghaffari, Noushin, Rodriguez, Oscar L., Bashir, Ali, Jackman, Shaun, Farrell, John J, Wenger, Aaron M, Alkan, Can, Soylev, Arda, Schatz, Michael C., Garg, Shilpa, Church, George, Marschall, Tobias, Chen, Ken, Fan, Xian, English, Adam C., Rosenfeld, Jeffrey A., Zhou, Weichen, Mills, Ryan E., Sage, Jay M., Davis, Jennifer R., Kaiser, Michael D., Oliver, John S., Catalano, Anthony P., Chaisson, Mark JP, Spies, Noah, Sedlazeck, Fritz J., Salit, Marc
Publicado 2020

An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates

por Mc Cartney, Ann M., Mahmoud, Medhat, Jochum, Michael, Agustinho, Daniel Paiva, Zorman, Barry, Al Khleifat, Ahmad, Dabbaghie, Fawaz, K Kesharwani, Rupesh, Smolka, Moritz, Dawood, Moez, Albin, Dreycey, Aliyev, Elbay, Almabrazi, Hakeem, Arslan, Ahmed, Balaji, Advait, Behera, Sairam, Billingsley, Kimberley, L Cameron, Daniel, Daw, Joyjit, T. Dawson, Eric, De Coster, Wouter, Du, Haowei, Dunn, Christopher, Esteban, Rocio, Jolly, Angad, Kalra, Divya, Liao, Chunxiao, Liu, Yunxi, Lu, Tsung-Yu, M Havrilla, James, M Khayat, Michael, Marin, Maximillian, Monlong, Jean, Price, Stephen, Rafael Gener, Alejandro, Ren, Jingwen, Sagayaradj, Sagayamary, Sapoval, Nicolae, Sinner, Claude, C. Soto, Daniela, Soylev, Arda, Subramaniyan, Arun, Syed, Najeeb, Tadimeti, Neha, Tater, Pamella, Vats, Pankaj, Vaughn, Justin, Walker, Kimberly, Wang, Gaojianyong, Zeng, Qiandong, Zhang, Shangzhe, Zhao, Tingting, Kille, Bryce, Biederstedt, Evan, Chaisson, Mark, English, Adam, Kronenberg, Zev, J. Treangen, Todd, Hefferon, Timothy, Chin, Chen-Shan, Busby, Ben, J Sedlazeck, Fritz
Publicado 2021