Pattern search in BioPAX models

por Babur, Özgün, Aksoy, Bülent Arman, Rodchenkov, Igor, Sümer, Selçuk Onur, Sander, Chris, Demir, Emek
Publicado 2014

SBGNViz: A Tool for Visualization and Complexity Management of SBGN Process Description Maps

por Sari, Mecit, Bahceci, Istemi, Dogrusoz, Ugur, Sumer, Selcuk Onur, Aksoy, Bülent Arman, Babur, Özgün, Demir, Emek
Publicado 2015

A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers

por Şenbabaoğlu, Yasin, Sümer, Selçuk Onur, Sánchez-Vega, Francisco, Bemis, Debra, Ciriello, Giovanni, Schultz, Nikolaus, Sander, Chris
Publicado 2016

MutationAligner: a resource of recurrent mutation hotspots in protein domains in cancer

por Gauthier, Nicholas Paul, Reznik, Ed, Gao, Jianjiong, Sumer, Selcuk Onur, Schultz, Nikolaus, Sander, Chris, Miller, Martin L.
Publicado 2016

3D clusters of somatic mutations in cancer reveal numerous rare mutations as functional targets

por Gao, Jianjiong, Chang, Matthew T., Johnsen, Hannah C., Gao, Sizhi Paul, Sylvester, Brooke E., Sumer, Selcuk Onur, Zhang, Hongxin, Solit, David B., Taylor, Barry S., Schultz, Nikolaus, Sander, Chris
Publicado 2017

The context-specific role of germline pathogenicity in tumorigenesis

por Srinivasan, Preethi, Bandlamudi, Chaitanya, Jonsson, Philip, Kemel, Yelena, Chavan, Shweta S., Richards, Allison L., Penson, Alexander V., Bielski, Craig M., Fong, Christopher, Syed, Aijazuddin, Jayakumaran, Gowtham, Prasad, Meera, Hwee, Jason, Sumer, Selcuk Onur, de Bruijn, Ino, Li, Xiang, Gao, JianJiong, Schultz, Nikolaus, Cambria, Roy, Galle, Jesse, Mukherjee, Semanti, Vijai, Joseph, Cadoo, Karen A., Carlo, Maria I., Walsh, Michael F., Mandelker, Diana, Ceyhan-Birsoy, Ozge, Shia, Jinru, Zehir, Ahmet, Ladanyi, Marc, Hyman, David M., Zhang, Liying, Offit, Kenneth, Robson, Mark E., Solit, David B., Stadler, Zsofia K., Berger, Michael F., Taylor, Barry S.
Publicado 2021

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

por de Bruijn, Ino, Kundra, Ritika, Mastrogiacomo, Brooke, Tran, Thinh Ngoc, Sikina, Luke, Mazor, Tali, Li, Xiang, Ochoa, Angelica, Zhao, Gaofei, Lai, Bryan, Abeshouse, Adam, Baiceanu, Diana, Ciftci, Ersin, Dogrusoz, Ugur, Dufilie, Andrew, Erkoc, Ziya, Garcia Lara, Elena, Fu, Zhaoyuan, Gross, Benjamin, Haynes, Charles, Heath, Allison, Higgins, David, Jagannathan, Prasanna, Kalletla, Karthik, Kumari, Priti, Lindsay, James, Lisman, Aaron, Leenknegt, Bas, Lukasse, Pieter, Madela, Divya, Madupuri, Ramyasree, van Nierop, Pim, Plantalech, Oleguer, Quach, Joyce, Resnick, Adam C., Rodenburg, Sander Y.A., Satravada, Baby A., Schaeffer, Fedde, Sheridan, Robert, Singh, Jessica, Sirohi, Rajat, Sumer, Selcuk Onur, van Hagen, Sjoerd, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhu, Kelsey, Rusk, Nicole, Brown, Samantha, Lavery, Jessica A., Panageas, Katherine S., Rudolph, Julia E., LeNoue-Newton, Michele L., Warner, Jeremy L., Guo, Xindi, Hunter-Zinck, Haley, Yu, Thomas V., Pilai, Shirin, Nichols, Chelsea, Gardos, Stuart M., Philip, John, Kehl, Kenneth L., Riely, Gregory J., Schrag, Deborah, Lee, Jocelyn, Fiandalo, Michael V., Sweeney, Shawn M., Pugh, Trevor J., Sander, Chris, Cerami, Ethan, Gao, Jianjiong, Schultz, Nikolaus
Publicado 2023