A computational approach for positive genetic identification and relatedness detection from low-coverage shotgun sequencing data

por Nguyen, Remy, Kapp, Joshua D, Sacco, Samuel, Myers, Steven P, Green, Richard E
Publicado 2023

A reference genome assembly of the declining tricolored blackbird, Agelaius tricolor

por Ballare, Kimberly M, Escalona, Merly, Barr, Kelly, Seligmann, William, Sacco, Samuel, Sahasrabudhe, Ruta Madhusudan, Nguyen, Oanh, Wyckoff, Christy, Smith, Thomas B, Shapiro, Beth
Publicado 2022

Reference genome of the black rail, Laterallus jamaicensis

por Hall, Laurie A, Wang, Ian J, Escalona, Merly, Beraut, Eric, Sacco, Samuel, Sahasrabudhe, Ruta, Nguyen, Oanh, Toffelmier, Erin, Shaffer, H Bradley, Beissinger, Steven R
Publicado 2023

Reference genome of the Virginia rail, Rallus limicola

por Hall, Laurie A, Wang, Ian J, Escalona, Merly, Beraut, Eric, Sacco, Samuel, Sahasrabudhe, Ruta, Nguyen, Oanh, Toffelmier, Erin, Shaffer, H Bradley, Beissinger, Steven R
Publicado 2023

Delayed postglacial colonization of Betula in Iceland and the circum North Atlantic

por Harning, David J, Sacco, Samuel, Anamthawat-Jónsson, Kesara, Ardenghi, Nicolò, Thordarson, Thor, Raberg, Jonathan H, Sepúlveda, Julio, Geirsdóttir, Áslaug, Shapiro, Beth, Miller, Gifford H
Publicado 2023

Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems

por Bernardi, Giacomo, DeBiasse, Melissa, Escalona, Merly, Marimuthu, Mohan P A, Nguyen, Oanh, Sacco, Samuel, Beraut, Eric, Miller, Courtney, Toffelmier, Erin, Shaffer, H Bradley
Publicado 2022

Reference genome of California walnut, Juglans californica, and resemblance with other genomes in the order Fagales

por Fitz-Gibbon, Sorel, Mead, Alayna, O’Donnell, Scott, Li, Zhi-Zhong, Escalona, Merly, Beraut, Eric, Sacco, Samuel, Marimuthu, Mohan P A, Nguyen, Oanh, Sork, Victoria L
Publicado 2023

Reference Genome of the Black Surfperch, Embiotoca jacksoni (Embiotocidae, Perciformes), a California Kelp Forest Fish That Lacks a Pelagic Larval Stage

por Bernardi, Giacomo, Toy, Jason A, Escalona, Merly, Marimuthu, Mohan P A, Sahasrabudhe, Ruta, Nguyen, Oanh, Sacco, Samuel, Beraut, Eric, Toffelmier, Erin, Miller, Courtney, Shaffer, H Bradley
Publicado 2022

Reference genome of the Monkeyface Prickleback, Cebidichthys violaceus

por Wright, Daniel B, Escalona, Merly, Marimuthu, Mohan P A, Sahasrabudhe, Ruta, Nguyen, Oanh, Sacco, Samuel, Beraut, Eric, Toffelmier, Erin, Miller, Courtney, Shaffer, H Bradley, Bernardi, Giacomo, German, Donovan P
Publicado 2022

Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae)

por Adams, Seira A, Graham, Natalie R, Holmquist, Anna J, Sheffer, Monica M, Steigerwald, Emma C, Sahasrabudhe, Ruta, Nguyen, Oanh, Beraut, Eric, Fairbairn, Colin, Sacco, Samuel, Seligmann, William, Escalona, Merly, Shaffer, H Bradley, Toffelmier, Erin, Gillespie, Rosemary G
Publicado 2023

Conformational flexibility of HIV-1 envelope glycoproteins modulates transmitted / founder sensitivity to broadly neutralizing antibodies

por Ratnapriya, Sneha, Pothula, Karunakar Reddy, Dam, Kim-Marie A., Parthasarathy, Durgadevi, Benet, Héctor Cervera, Parsons, Ruth, Huang, Xiao, Sammour, Salam, Janowska, Katarzyna, Harris, Miranda, Ahmed, Shamim, Sacco, Samuel, Sodroski, Joseph, Bridges, Michael D., Hubbell, Wayne L., Acharya, Priyamvada, Herschhorn, Alon
Publicado 2023

A draft human pangenome reference

por Liao, Wen-Wei, Asri, Mobin, Ebler, Jana, Doerr, Daniel, Haukness, Marina, Hickey, Glenn, Lu, Shuangjia, Lucas, Julian K., Monlong, Jean, Abel, Haley J., Buonaiuto, Silvia, Chang, Xian H., Cheng, Haoyu, Chu, Justin, Colonna, Vincenza, Eizenga, Jordan M., Feng, Xiaowen, Fischer, Christian, Fulton, Robert S., Garg, Shilpa, Groza, Cristian, Guarracino, Andrea, Harvey, William T., Heumos, Simon, Howe, Kerstin, Jain, Miten, Lu, Tsung-Yu, Markello, Charles, Martin, Fergal J., Mitchell, Matthew W., Munson, Katherine M., Mwaniki, Moses Njagi, Novak, Adam M., Olsen, Hugh E., Pesout, Trevor, Porubsky, David, Prins, Pjotr, Sibbesen, Jonas A., Sirén, Jouni, Tomlinson, Chad, Villani, Flavia, Vollger, Mitchell R., Antonacci-Fulton, Lucinda L., Baid, Gunjan, Baker, Carl A., Belyaeva, Anastasiya, Billis, Konstantinos, Carroll, Andrew, Chang, Pi-Chuan, Cody, Sarah, Cook, Daniel E., Cook-Deegan, Robert M., Cornejo, Omar E., Diekhans, Mark, Ebert, Peter, Fairley, Susan, Fedrigo, Olivier, Felsenfeld, Adam L., Formenti, Giulio, Frankish, Adam, Gao, Yan, Garrison, Nanibaa’ A., Giron, Carlos Garcia, Green, Richard E., Haggerty, Leanne, Hoekzema, Kendra, Hourlier, Thibaut, Ji, Hanlee P., Kenny, Eimear E., Koenig, Barbara A., Kolesnikov, Alexey, Korbel, Jan O., Kordosky, Jennifer, Koren, Sergey, Lee, HoJoon, Lewis, Alexandra P., Magalhães, Hugo, Marco-Sola, Santiago, Marijon, Pierre, McCartney, Ann, McDaniel, Jennifer, Mountcastle, Jacquelyn, Nattestad, Maria, Nurk, Sergey, Olson, Nathan D., Popejoy, Alice B., Puiu, Daniela, Rautiainen, Mikko, Regier, Allison A., Rhie, Arang, Sacco, Samuel, Sanders, Ashley D., Schneider, Valerie A., Schultz, Baergen I., Shafin, Kishwar, Smith, Michael W., Sofia, Heidi J., Abou Tayoun, Ahmad N., Thibaud-Nissen, Françoise, Tricomi, Francesca Floriana, Wagner, Justin, Walenz, Brian, Wood, Jonathan M. D., Zimin, Aleksey V., Bourque, Guillaume, Chaisson, Mark J. P., Flicek, Paul, Phillippy, Adam M., Zook, Justin M., Eichler, Evan E., Haussler, David, Wang, Ting, Jarvis, Erich D., Miga, Karen H., Garrison, Erik, Marschall, Tobias, Hall, Ira M., Li, Heng, Paten, Benedict
Publicado 2023