A comprehensive evaluation of module detection methods for gene expression data

por Saelens, Wouter, Cannoodt, Robrecht, Saeys, Yvan
Publicado 2018

TinGa: fast and flexible trajectory inference with Growing Neural Gas

por Todorov, Helena, Cannoodt, Robrecht, Saelens, Wouter, Saeys, Yvan
Publicado 2020

Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells

por Cannoodt, Robrecht, Saelens, Wouter, Deconinck, Louise, Saeys, Yvan
Publicado 2021

Trajectory-based differential expression analysis for single-cell sequencing data

por Van den Berge, Koen, Roux de Bézieux, Hector, Street, Kelly, Saelens, Wouter, Cannoodt, Robrecht, Saeys, Yvan, Dudoit, Sandrine, Clement, Lieven
Publicado 2020

Essential guidelines for computational method benchmarking

por Weber, Lukas M., Saelens, Wouter, Cannoodt, Robrecht, Soneson, Charlotte, Hapfelmeier, Alexander, Gardner, Paul P., Boulesteix, Anne-Laure, Saeys, Yvan, Robinson, Mark D.
Publicado 2019

Live-seq enables temporal transcriptomic recording of single cells

por Chen, Wanze, Guillaume-Gentil, Orane, Rainer, Pernille Yde, Gäbelein, Christoph G., Saelens, Wouter, Gardeux, Vincent, Klaeger, Amanda, Dainese, Riccardo, Zachara, Magda, Zambelli, Tomaso, Vorholt, Julia A., Deplancke, Bart
Publicado 2022

CD8 memory precursor cell generation is a continuous process

por Todorov, Helena, Prieux, Margaux, Laubreton, Daphne, Bouvier, Matteo, Wang, Shaoying, de Bernard, Simon, Arpin, Christophe, Cannoodt, Robrecht, Saelens, Wouter, Bonnaffoux, Arnaud, Gandrillon, Olivier, Crauste, Fabien, Saeys, Yvan, Marvel, Jacqueline
Publicado 2022

The transcription factor Zeb2 regulates development of conventional and plasmacytoid DCs by repressing Id2

por Scott, Charlotte L., Soen, Bieke, Martens, Liesbet, Skrypek, Nicolas, Saelens, Wouter, Taminau, Joachim, Blancke, Gillian, Van Isterdael, Gert, Huylebroeck, Danny, Haigh, Jody, Saeys, Yvan, Guilliams, Martin, Lambrecht, Bart N., Berx, Geert
Publicado 2016

Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes

por Raz, Amelie A, Vida, Gabriela S, Stern, Sarah R, Mahadevaraju, Sharvani, Fingerhut, Jaclyn M, Viveiros, Jennifer M, Pal, Soumitra, Grey, Jasmine R, Grace, Mara R, Berry, Cameron W, Li, Hongjie, Janssens, Jasper, Saelens, Wouter, Shao, Zhantao, Hu, Chun, Yamashita, Yukiko M, Przytycka, Teresa, Oliver, Brian, Brill, Julie A, Krause, Henry, Matunis, Erika L, White-Cooper, Helen, DiNardo, Stephen, Fuller, Margaret T
Publicado 2023

The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages

por Scott, Charlotte L., T’Jonck, Wouter, Martens, Liesbet, Todorov, Helena, Sichien, Dorine, Soen, Bieke, Bonnardel, Johnny, De Prijck, Sofie, Vandamme, Niels, Cannoodt, Robrecht, Saelens, Wouter, Vanneste, Bavo, Toussaint, Wendy, De Bleser, Pieter, Takahashi, Nozomi, Vandenabeele, Peter, Henri, Sandrine, Pridans, Clare, Hume, David A., Lambrecht, Bart N., De Baetselier, Patrick, Milling, Simon W.F., Van Ginderachter, Jo A., Malissen, Bernard, Berx, Geert, Beschin, Alain, Saeys, Yvan, Guilliams, Martin
Publicado 2018

Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

por Guilliams, Martin, Bonnardel, Johnny, Haest, Birthe, Vanderborght, Bart, Wagner, Camille, Remmerie, Anneleen, Bujko, Anna, Martens, Liesbet, Thoné, Tinne, Browaeys, Robin, De Ponti, Federico F., Vanneste, Bavo, Zwicker, Christian, Svedberg, Freya R., Vanhalewyn, Tineke, Gonçalves, Amanda, Lippens, Saskia, Devriendt, Bert, Cox, Eric, Ferrero, Giuliano, Wittamer, Valerie, Willaert, Andy, Kaptein, Suzanne J.F., Neyts, Johan, Dallmeier, Kai, Geldhof, Peter, Casaert, Stijn, Deplancke, Bart, ten Dijke, Peter, Hoorens, Anne, Vanlander, Aude, Berrevoet, Frederik, Van Nieuwenhove, Yves, Saeys, Yvan, Saelens, Wouter, Van Vlierberghe, Hans, Devisscher, Lindsey, Scott, Charlotte L.
Publicado 2022