The intelligence in developing systems for molecular biology

por Sahinalp, S Cenk
Publicado 2007

Fast prediction of RNA-RNA interaction

por Salari, Raheleh, Backofen, Rolf, Sahinalp, S Cenk
Publicado 2010

Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution

por Hormozdiari, Fereydoun, Berenbrink, Petra, Pržulj, Nataša, Sahinalp, S. Cenk
Publicado 2007

A partition function algorithm for interacting nucleic acid strands

por Chitsaz, Hamidreza, Salari, Raheleh, Sahinalp, S. Cenk, Backofen, Rolf
Publicado 2009

Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies

por Hajirasouliha, Iman, Hormozdiari, Fereydoun, Sahinalp, S. Cenk, Birol, Inanc
Publicado 2008

Genotyping and Copy Number Analysis of Immunoglobin Heavy Chain Variable Genes Using Long Reads

por Ford, Michael, Haghshenas, Ehsan, Watson, Corey T., Sahinalp, S. Cenk
Publicado 2020

Genotyping and Copy Number Analysis of Immunoglobulin Heavy Chain Variable Genes Using Long Reads

por Ford, Michael, Haghshenas, Ehsan, Watson, Corey T., Sahinalp, S. Cenk
Publicado 2020

Sparsification of RNA structure prediction including pseudoknots

por Möhl, Mathias, Salari, Raheleh, Will, Sebastian, Backofen, Rolf, Sahinalp, S Cenk
Publicado 2010

A multi-labeled tree dissimilarity measure for comparing “clonal trees” of tumor progression

por Karpov, Nikolai, Malikic, Salem, Rahman, Md. Khaledur, Sahinalp, S. Cenk
Publicado 2019

taveRNA: a web suite for RNA algorithms and applications

por Aksay, Cagri, Salari, Raheleh, Karakoc, Emre, Alkan, Can, Sahinalp, S. Cenk
Publicado 2007

Biomolecular network motif counting and discovery by color coding

por Alon, Noga, Dao, Phuong, Hajirasouliha, Iman, Hormozdiari, Fereydoun, Sahinalp, S. Cenk
Publicado 2008

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

por Malikic, Salem, Jahn, Katharina, Kuipers, Jack, Sahinalp, S. Cenk, Beerenwinkel, Niko
Publicado 2019

Optimally discriminative subnetwork markers predict response to chemotherapy

por Dao, Phuong, Wang, Kendric, Collins, Colin, Ester, Martin, Lapuk, Anna, Sahinalp, S. Cenk
Publicado 2011

Tumor Phylogeny Topology Inference via Deep Learning

por Sadeqi Azer, Erfan, Haghir Ebrahimabadi, Mohammad, Malikić, Salem, Khardon, Roni, Sahinalp, S. Cenk
Publicado 2020

Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data

por Alkan, Can, Ventura, Mario, Archidiacono, Nicoletta, Rocchi, Mariano, Sahinalp, S. Cenk, Eichler, Evan E
Publicado 2007

smyRNA: A Novel Ab Initio ncRNA Gene Finder

por Salari, Raheleh, Aksay, Cagri, Karakoc, Emre, Unrau, Peter J., Hajirasouliha, Iman, Sahinalp, S. Cenk
Publicado 2009

Dissect: detection and characterization of novel structural alterations in transcribed sequences

por Yorukoglu, Deniz, Hach, Faraz, Swanson, Lucas, Collins, Colin C., Birol, Inanc, Sahinalp, S. Cenk
Publicado 2012

mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications

por Hach, Faraz, Sarrafi, Iman, Hormozdiari, Farhad, Alkan, Can, Eichler, Evan E., Sahinalp, S. Cenk
Publicado 2014

nFuse: Discovery of complex genomic rearrangements in cancer using high-throughput sequencing

por McPherson, Andrew, Wu, Chunxiao, Wyatt, Alexander W., Shah, Sohrab, Collins, Colin, Sahinalp, S. Cenk
Publicado 2012

Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data

por Numanagić, Ibrahim, Malikić, Salem, Pratt, Victoria M., Skaar, Todd C., Flockhart, David A., Sahinalp, S. Cenk
Publicado 2015