Comparative Genomics Integrated with Association Analysis Identifies Candidate Effector Genes Corresponding to Lr20 in Phenotype-Paired Puccinia triticina Isolates from Australia

por Wu, Jing Qin, Sakthikumar, Sharadha, Dong, Chongmei, Zhang, Peng, Cuomo, Christina A., Park, Robert F.
Publicado 2017

Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes

por Sakthikumar, Sharadha, Roy, Ananya, Haseeb, Lulu, Pettersson, Mats E., Sundström, Elisabeth, Marinescu, Voichita D., Lindblad-Toh, Kerstin, Forsberg-Nilsson, Karin
Publicado 2020

PIK3CA is recurrently mutated in canine mammary tumors, similarly to in human mammary neoplasia

por Arendt, Maja Louise, Sakthikumar, Sharadha, Melin, Malin, Elvers, Ingegerd, Rivera, Patricio, Larsen, Majbritt, Saellström, Sara, Lingaas, Frode, Rönnberg, Henrik, Lindblad-Toh, Kerstin
Publicado 2023

Using evolutionary constraint to define novel candidate driver genes in medulloblastoma

por Roy, Ananya, Sakthikumar, Sharadha, Kozyrev, Sergey V., Nordin, Jessika, Pensch, Raphaela, Mäkeläinen, Suvi, Pettersson, Mats, Karlsson, Elinor K., Lindblad-Toh, Kerstin, Forsberg-Nilsson, Karin
Publicado 2023

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

por Walker, Bruce J., Abeel, Thomas, Shea, Terrance, Priest, Margaret, Abouelliel, Amr, Sakthikumar, Sharadha, Cuomo, Christina A., Zeng, Qiandong, Wortman, Jennifer, Young, Sarah K., Earl, Ashlee M.
Publicado 2014

Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii

por Farrer, Rhys A., Desjardins, Christopher A., Sakthikumar, Sharadha, Gujja, Sharvari, Saif, Sakina, Zeng, Qiandong, Chen, Yuan, Voelz, Kerstin, Heitman, Joseph, May, Robin C., Fisher, Matthew C., Cuomo, Christina A.
Publicado 2015

Genetic and phenotypic intra-species variation in Candida albicans

por Hirakawa, Matthew P., Martinez, Diego A., Sakthikumar, Sharadha, Anderson, Matthew Z., Berlin, Aaron, Gujja, Sharvari, Zeng, Qiandong, Zisson, Ethan, Wang, Joshua M., Greenberg, Joshua M., Berman, Judith, Bennett, Richard J., Cuomo, Christina A.
Publicado 2015

Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii

por Chen, Yuan, Farrer, Rhys A., Giamberardino, Charles, Sakthikumar, Sharadha, Jones, Alexander, Yang, Timothy, Tenor, Jennifer L., Wagih, Omar, Van Wyk, Marelize, Govender, Nelesh P., Mitchell, Thomas G., Litvintseva, Anastasia P., Cuomo, Christina A., Perfect, John R.
Publicado 2017

Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides

por Muñoz, José F., Farrer, Rhys A., Desjardins, Christopher A., Gallo, Juan E., Sykes, Sean, Sakthikumar, Sharadha, Misas, Elizabeth, Whiston, Emily A., Bagagli, Eduardo, Soares, Celia M. A., Teixeira, Marcus de M., Taylor, John W., Clay, Oliver K., McEwen, Juan G., Cuomo, Christina A.
Publicado 2016

Novel genomic prognostic biomarkers for dogs with cancer

por Chon, Esther, Sakthikumar, Sharadha, Tang, Min, Hamilton, Matthew J., Vaughan, Andrew, Smith, Ashley, Sommer, Breann, Robat, Cecilia, Manley, Christina, Mullin, Christine, Ohashi, Emi, Manor, Emily, Custis, James, Intile, Joanne, Shiu, Kai Biu, Parshley, Lisa, Bergman, Noelle, Sheppard‐Olivares, Sabina, Hafeman, Scott, Wright, Zachary, Haworth, David, Hendricks, William, Wang, Guannan
Publicado 2023

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci

por Cuomo, Christina A., Bakkeren, Guus, Khalil, Hala Badr, Panwar, Vinay, Joly, David, Linning, Rob, Sakthikumar, Sharadha, Song, Xiao, Adiconis, Xian, Fan, Lin, Goldberg, Jonathan M., Levin, Joshua Z., Young, Sarah, Zeng, Qiandong, Anikster, Yehoshua, Bruce, Myron, Wang, Meinan, Yin, Chuntao, McCallum, Brent, Szabo, Les J., Hulbert, Scot, Chen, Xianming, Fellers, John P.
Publicado 2016

Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level

por Rhodes, Johanna, Desjardins, Christopher A., Sykes, Sean M., Beale, Mathew A., Vanhove, Mathieu, Sakthikumar, Sharadha, Chen, Yuan, Gujja, Sharvari, Saif, Sakina, Chowdhary, Anuradha, Lawson, Daniel John, Ponzio, Vinicius, Colombo, Arnaldo Lopes, Meyer, Wieland, Engelthaler, David M., Hagen, Ferry, Illnait-Zaragozi, Maria Teresa, Alanio, Alexandre, Vreulink, Jo-Marie, Heitman, Joseph, Perfect, John R., Litvintseva, Anastasia P., Bicanic, Tihana, Harrison, Thomas S., Fisher, Matthew C., Cuomo, Christina A.
Publicado 2017

Leveraging Base Pair Mammalian Constraint to Understand Genetic Variation and Human Disease

por Sullivan, Patrick F., Meadows, Jennifer R. S., Gazal, Steven, Phan, BaDoi N., Li, Xue, Genereux, Diane P., Dong, Michael X., Bianchi, Matteo, Andrews, Gregory, Sakthikumar, Sharadha, Nordin, Jessika, Roy, Ananya, Christmas, Matthew J., Marinescu, Voichita D., Wallerman, Ola, Xue, James R., Li, Yun, Yao, Shuyang, Sun, Quan, Szatkiewicz, Jin, Wen, Jia, Huckins, Laura M., Lawler, Alyssa J., Keough, Kathleen C., Zheng, Zhili, Zeng, Jian, Wray, Naomi R., Johnson, Jessica, Chen, Jiawen, Paten, Benedict, Reilly, Steven K., Hughes, Graham M., Weng, Zhiping, Pollard, Katherine S., Pfenning, Andreas R., Forsberg-Nilsson, Karin, Karlsson, Elinor K., Lindblad-Toh, Kerstin
Publicado 2023

Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis

por Desjardins, Christopher A., Champion, Mia D., Holder, Jason W., Muszewska, Anna, Goldberg, Jonathan, Bailão, Alexandre M., Brigido, Marcelo Macedo, Ferreira, Márcia Eliana da Silva, Garcia, Ana Maria, Grynberg, Marcin, Gujja, Sharvari, Heiman, David I., Henn, Matthew R., Kodira, Chinnappa D., León-Narváez, Henry, Longo, Larissa V. G., Ma, Li-Jun, Malavazi, Iran, Matsuo, Alisson L., Morais, Flavia V., Pereira, Maristela, Rodríguez-Brito, Sabrina, Sakthikumar, Sharadha, Salem-Izacc, Silvia M., Sykes, Sean M., Teixeira, Marcus Melo, Vallejo, Milene C., Walter, Maria Emília Machado Telles, Yandava, Chandri, Young, Sarah, Zeng, Qiandong, Zucker, Jeremy, Felipe, Maria Sueli, Goldman, Gustavo H., Haas, Brian J., McEwen, Juan G., Nino-Vega, Gustavo, Puccia, Rosana, San-Blas, Gioconda, Soares, Celia Maria de Almeida, Birren, Bruce W., Cuomo, Christina A.
Publicado 2011

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

por Butler, Geraldine, Rasmussen, Matthew D., Lin, Michael F., Santos, Manuel A.S., Sakthikumar, Sharadha, Munro, Carol A., Rheinbay, Esther, Grabherr, Manfred, Forche, Anja, Reedy, Jennifer L., Agrafioti, Ino, Arnaud, Martha B., Bates, Steven, Brown, Alistair J.P., Brunke, Sascha, Costanzo, Maria C., Fitzpatrick, David A., de Groot, Piet W. J., Harris, David, Hoyer, Lois L., Hube, Bernhard, Klis, Frans M., Kodira, Chinnappa, Lennard, Nicola, Logue, Mary E., Martin, Ronny, Neiman, Aaron M., Nikolaou, Elissavet, Quail, Michael A., Quinn, Janet, Santos, Maria C., Schmitzberger, Florian F., Sherlock, Gavin, Shah, Prachi, Silverstein, Kevin, Skrzypek, Marek S., Soll, David, Staggs, Rodney, Stansfield, Ian, Stumpf, Michael P H, Sudbery, Peter E., Thyagarajan, Srikantha, Zeng, Qiandong, Berman, Judith, Berriman, Matthew, Heitman, Joseph, Gow, Neil A. R., Lorenz, Michael C., Birren, Bruce W., Kellis, Manolis, Cuomo, Christina A.
Publicado 2009