Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution

por Wint, Rhondene, Salamov, Asaf, Grigoriev, Igor V
Publicado 2022

The Pedant Human Genome Database ? Functional Annotation of the Human Genome

por Schüller, Christine M.E., Geier, Birgitta, Fritz, Andreas, Salamov, Asaf, Seledsov, Igor, Solovyev, Victor, Frishman, Dimitrij
Publicado 2002

Genetic and Structural Diversity of Prokaryotic Ice-Binding Proteins from the Central Arctic Ocean

por Winder, Johanna C., Boulton, William, Salamov, Asaf, Eggers, Sarah Lena, Metfies, Katja, Moulton, Vincent, Mock, Thomas
Publicado 2023

A Genomic Catalog of Stress Response Genes in Anaerobic Fungi for Applications in Bioproduction

por Swift, Candice L., Malinov, Nikola G., Mondo, Stephen J., Salamov, Asaf, Grigoriev, Igor V., O'Malley, Michelle A.
Publicado 2021

Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi

por Wilken, St. Elmo, Seppälä, Susanna, Lankiewicz, Thomas S., Saxena, Mohan, Henske, John K., Salamov, Asaf A., Grigoriev, Igor V., O’Malley, Michelle A.
Publicado 2019

Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1

por Firrincieli, Andrea, Otillar, Robert, Salamov, Asaf, Schmutz, Jeremy, Khan, Zareen, Redman, Regina S., Fleck, Neil D., Lindquist, Erika, Grigoriev, Igor V., Doty, Sharon L.
Publicado 2015

Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi

por Chang, Ying, Rochon, D’Ann, Sekimoto, Satoshi, Wang, Yan, Chovatia, Mansi, Sandor, Laura, Salamov, Asaf, Grigoriev, Igor V., Stajich, Jason E., Spatafora, Joseph W.
Publicado 2021

Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolu...

por Tabima, Javier F., Trautman, Ian A., Chang, Ying, Wang, Yan, Mondo, Stephen, Kuo, Alan, Salamov, Asaf, Grigoriev, Igor V., Stajich, Jason E., Spatafora, Joseph W.
Publicado 2020

An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi

por Hage, Hayat, Couillaud, Julie, Salamov, Asaf, Loussouarn-Yvon, Margot, Durbesson, Fabien, Ormeño, Elena, Grisel, Sacha, Duquesne, Katia, Vincentelli, Renaud, Grigoriev, Igor, Iacazio, Gilles, Rosso, Marie-Noëlle
Publicado 2023

PhycoCosm, a comparative algal genomics resource

por Grigoriev, Igor V, Hayes, Richard D, Calhoun, Sara, Kamel, Bishoy, Wang, Alice, Ahrendt, Steven, Dusheyko, Sergey, Nikitin, Roman, Mondo, Stephen J, Salamov, Asaf, Shabalov, Igor, Kuo, Alan
Publicado 2020

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

por Gordon, Sean P., Tseng, Elizabeth, Salamov, Asaf, Zhang, Jiwei, Meng, Xiandong, Zhao, Zhiying, Kang, Dongwan, Underwood, Jason, Grigoriev, Igor V., Figueroa, Melania, Schilling, Jonathan S., Chen, Feng, Wang, Zhong
Publicado 2015

MycoCosm portal: gearing up for 1000 fungal genomes

por Grigoriev, Igor V., Nikitin, Roman, Haridas, Sajeet, Kuo, Alan, Ohm, Robin, Otillar, Robert, Riley, Robert, Salamov, Asaf, Zhao, Xueling, Korzeniewski, Frank, Smirnova, Tatyana, Nordberg, Henrik, Dubchak, Inna, Shabalov, Igor
Publicado 2014

The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa

por Thieme, Nils, Wu, Vincent W., Dietschmann, Axel, Salamov, Asaf A., Wang, Mei, Johnson, Jenifer, Singan, Vasanth R., Grigoriev, Igor V., Glass, N. Louise, Somerville, Chris R., Benz, J. Philipp
Publicado 2017

Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication

por Theobald, Sebastian, Vesth, Tammi C., Rendsvig, Jakob Kræmmer, Nielsen, Kristian Fog, Riley, Robert, de Abreu, Lucas Magalhães, Salamov, Asaf, Frisvad, Jens Christian, Larsen, Thomas Ostenfeld, Andersen, Mikael Rørdam, Hoof, Jakob Blæsbjerg
Publicado 2018

A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)

por Diesel, Jose, Molano, Gary, Montecinos, Gabriel J., DeWeese, Kelly, Calhoun, Sara, Kuo, Alan, Lipzen, Anna, Salamov, Asaf, Grigoriev, Igor V., Reed, Daniel C., Miller, Robert J., Nuzhdin, Sergey V., Alberto, Filipe
Publicado 2023

Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans

por Duncan, Anthony, Barry, Kerrie, Daum, Chris, Eloe-Fadrosh, Emiley, Roux, Simon, Schmidt, Katrin, Tringe, Susannah G., Valentin, Klaus U., Varghese, Neha, Salamov, Asaf, Grigoriev, Igor V., Leggett, Richard M., Moulton, Vincent, Mock, Thomas
Publicado 2022

Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms

por Duncan, Anthony, Barry, Kerrie, Daum, Chris, Eloe-Fadrosh, Emiley, Roux, Simon, Schmidt, Katrin, Tringe, Susannah G., Valentin, Klaus U., Varghese, Neha, Salamov, Asaf, Grigoriev, Igor V., Leggett, Richard M., Moulton, Vincent, Mock, Thomas
Publicado 2023

Two major chromosome evolution events with unrivaled conserved gene content in pomegranate

por Akparov, Zeynal, Hajiyeva, Sabina, Abbasov, Mehraj, Kaur, Sukhjiwan, Hamwieh, Aladdin, Alsamman, Alsamman M., Hajiyev, Elchin, Babayeva, Sevda, Izzatullayeva, Vusala, Mustafayeva, Ziyafat, Mehdiyeva, Sabina, Mustafayev, Orkhan, Shahmuradov, Ilham, Kosarev, Peter, Solovyev, Victor, Salamov, Asaf, Jighly, Abdulqader
Publicado 2023

Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes

por Peng, Xuefeng, Wilken, St. Elmo, Lankiewicz, Thomas S., Gilmore, Sean P., Brown, Jennifer L., Henske, John K., Swift, Candice L., Salamov, Asaf, Barry, Kerrie, Grigoriev, Igor V., Theodorou, Michael K., Valentine, David L., O’Malley, Michelle A.
Publicado 2021

Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants

por Chang, Ying, Wang, Sishuo, Sekimoto, Satoshi, Aerts, Andrea L., Choi, Cindy, Clum, Alicia, LaButti, Kurt M., Lindquist, Erika A., Yee Ngan, Chew, Ohm, Robin A., Salamov, Asaf A., Grigoriev, Igor V., Spatafora, Joseph W., Berbee, Mary L.
Publicado 2015