PBHoney: identifying genomic variants via long-read discordance and interrupted mapping

por English, Adam C, Salerno, William J, Reid, Jeffrey G
Publicado 2014

Sparse Project VCF: efficient encoding of population genotype matrices

por Lin, Michael F, Bai, Xiaodong, Salerno, William J, Reid, Jeffrey G
Publicado 2020

Parliament2: Accurate structural variant calling at scale

por Zarate, Samantha, Carroll, Andrew, Mahmoud, Medhat, Krasheninina, Olga, Jun, Goo, Salerno, William J, Schatz, Michael C, Boerwinkle, Eric, Gibbs, Richard A, Sedlazeck, Fritz J
Publicado 2020

Optimized sample selection for cost-efficient long-read population sequencing

por Ranallo-Benavidez, T. Rhyker, Lemmon, Zachary, Soyk, Sebastian, Aganezov, Sergey, Salerno, William J., McCoy, Rajiv C., Lippman, Zachary B., Schatz, Michael C., Sedlazeck, Fritz J.
Publicado 2021

VCPA: genomic variant calling pipeline and data management tool for Alzheimer’s Disease Sequencing Project

por Leung, Yuk Yee, Valladares, Otto, Chou, Yi-Fan, Lin, Han-Jen, Kuzma, Amanda B, Cantwell, Laura, Qu, Liming, Gangadharan, Prabhakaran, Salerno, William J, Schellenberg, Gerard D, Wang, Li-San
Publicado 2019

VCPA: genomic variant calling pipeline and data management tool for Alzheimer’s Disease Sequencing Project

por Leung, Yuk Yee, Valladares, Otto, Chou, Yi-Fan, Lin, Han-Jen, Kuzma, Amanda B, Cantwell, Laura, Qu, Liming, Gangadharan, Prabhakaran, Salerno, William J, Schellenberg, Gerard D, Wang, Li-San
Publicado 2019

SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads

por Hampton, Oliver A., English, Adam C., Wang, Mark, Salerno, William J., Liu, Yue, Muzny, Donna M., Han, Yi, Wheeler, David A., Worley, Kim C., Lupski, James R., Gibbs, Richard A.
Publicado 2017

xAtlas: scalable small variant calling across heterogeneous next-generation sequencing experiments

por Farek, Jesse, Hughes, Daniel, Salerno, William, Zhu, Yiming, Pisupati, Aishwarya, Mansfield, Adam, Krasheninina, Olga, English, Adam C, Metcalf, Ginger, Boerwinkle, Eric, Muzny, Donna M, Gibbs, Richard, Khan, Ziad, Sedlazeck, Fritz J
Publicado 2023

Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline

por Reid, Jeffrey G, Carroll, Andrew, Veeraraghavan, Narayanan, Dahdouli, Mahmoud, Sundquist, Andreas, English, Adam, Bainbridge, Matthew, White, Simon, Salerno, William, Buhay, Christian, Yu, Fuli, Muzny, Donna, Daly, Richard, Duyk, Geoff, Gibbs, Richard A, Boerwinkle, Eric
Publicado 2014

Mapping and characterization of structural variation in 17,795 human genomes

por Abel, Haley J., Larson, David E., Regier, Allison A., Chiang, Colby, Das, Indraniel, Kanchi, Krishna L., Layer, Ryan M., Neale, Benjamin M., Salerno, William J., Reeves, Catherine, Buyske, Steven, Matise, Tara C., Muzny, Donna M., Zody, Michael C., Lander, Eric S., Dutcher, Susan K., Stitziel, Nathan O., Hall, Ira M.
Publicado 2020

The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences

por Xue, Cheng, Raveendran, Muthuswamy, Harris, R. Alan, Fawcett, Gloria L., Liu, Xiaoming, White, Simon, Dahdouli, Mahmoud, Rio Deiros, David, Below, Jennifer E., Salerno, William, Cox, Laura, Fan, Guoping, Ferguson, Betsy, Horvath, Julie, Johnson, Zach, Kanthaswamy, Sree, Kubisch, H. Michael, Liu, Dahai, Platt, Michael, Smith, David G., Sun, Binghua, Vallender, Eric J., Wang, Feng, Wiseman, Roger W., Chen, Rui, Muzny, Donna M., Gibbs, Richard A., Yu, Fuli, Rogers, Jeffrey
Publicado 2016

Atlas-CNV: a validated approach to call single-exon CNVs in the eMERGESeq gene panel

por Chiang, Theodore, Liu, Xiuping, Wu, Tsung-Jung, Hu, Jianhong, Sedlazeck, Fritz J., White, Simon, Schaid, Daniel, Andrade, Mariza de, Jarvik, Gail P., Crosslin, David, Stanaway, Ian, Carrell, David S., Connolly, John J., Hakonarson, Hakon, Groopman, Emily E., Gharavi, Ali G., Fedotov, Alexander, Bi, Weimin, Leduc, Magalie S., Murdock, David R., Jiang, Yunyun, Meng, Linyan, Eng, Christine M., Wen, Shu, Yang, Yaping, Muzny, Donna M., Boerwinkle, Eric, Salerno, William, Venner, Eric, Gibbs, Richard A.
Publicado 2019

Assessing structural variation in a personal genome—towards a human reference diploid genome

por English, Adam C, Salerno, William J, Hampton, Oliver A, Gonzaga-Jauregui, Claudia, Ambreth, Shruthi, Ritter, Deborah I, Beck, Christine R, Davis, Caleb F, Dahdouli, Mahmoud, Ma, Singer, Carroll, Andrew, Veeraraghavan, Narayanan, Bruestle, Jeremy, Drees, Becky, Hastie, Alex, Lam, Ernest T, White, Simon, Mishra, Pamela, Wang, Min, Han, Yi, Zhang, Feng, Stankiewicz, Pawel, Wheeler, David A, Reid, Jeffrey G, Muzny, Donna M, Rogers, Jeffrey, Sabo, Aniko, Worley, Kim C, Lupski, James R, Boerwinkle, Eric, Gibbs, Richard A
Publicado 2015

A deep catalog of protein-coding variation in 985,830 individuals

por Sun, Kathie Y., Bai, Xiaodong, Chen, Siying, Bao, Suying, Kapoor, Manav, Zhang, Chuanyi, Backman, Joshua, Joseph, Tyler, Maxwell, Evan, Mitra, George, Gorovits, Alexander, Mansfield, Adam, Boutkov, Boris, Gokhale, Sujit, Habegger, Lukas, Marcketta, Anthony, Locke, Adam, Kessler, Michael D., Sharma, Deepika, Staples, Jeffrey, Bovijn, Jonas, Gelfman, Sahar, Gioia, Alessandro Di, Rajagopal, Veera, Lopez, Alexander, Varela, Jennifer Rico, Alegre, Jesus, Berumen, Jaime, Tapia-Conyer, Roberto, Kuri-Morales, Pablo, Torres, Jason, Emberson, Jonathan, Collins, Rory, Cantor, Michael, Thornton, Timothy, Kang, Hyun Min, Overton, John, Shuldiner, Alan R., Cremona, M. Laura, Nafde, Mona, Baras, Aris, Abecasis, Goncalo, Marchini, Jonathan, Reid, Jeffrey G., Salerno, William, Balasubramanian, Suganthi
Publicado 2023

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum

por Sucgang, Richard, Kuo, Alan, Tian, Xiangjun, Salerno, William, Parikh, Anup, Feasley, Christa L, Dalin, Eileen, Tu, Hank, Huang, Eryong, Barry, Kerrie, Lindquist, Erika, Shapiro, Harris, Bruce, David, Schmutz, Jeremy, Salamov, Asaf, Fey, Petra, Gaudet, Pascale, Anjard, Christophe, Babu, M Madan, Basu, Siddhartha, Bushmanova, Yulia, van der Wel, Hanke, Katoh-Kurasawa, Mariko, Dinh, Christopher, Coutinho, Pedro M, Saito, Tamao, Elias, Marek, Schaap, Pauline, Kay, Robert R, Henrissat, Bernard, Eichinger, Ludwig, Rivero, Francisco, Putnam, Nicholas H, West, Christopher M, Loomis, William F, Chisholm, Rex L, Shaulsky, Gad, Strassmann, Joan E, Queller, David C, Kuspa, Adam, Grigoriev, Igor V
Publicado 2011

Exome sequencing and analysis of 454,787 UK Biobank participants

por Backman, Joshua D., Li, Alexander H., Marcketta, Anthony, Sun, Dylan, Mbatchou, Joelle, Kessler, Michael D., Benner, Christian, Liu, Daren, Locke, Adam E., Balasubramanian, Suganthi, Yadav, Ashish, Banerjee, Nilanjana, Gillies, Christopher E., Damask, Amy, Liu, Simon, Bai, Xiaodong, Hawes, Alicia, Maxwell, Evan, Gurski, Lauren, Watanabe, Kyoko, Kosmicki, Jack A., Rajagopal, Veera, Mighty, Jason, Jones, Marcus, Mitnaul, Lyndon, Stahl, Eli, Coppola, Giovanni, Jorgenson, Eric, Habegger, Lukas, Salerno, William J., Shuldiner, Alan R., Lotta, Luca A., Overton, John D., Cantor, Michael N., Reid, Jeffrey G., Yancopoulos, George, Kang, Hyun M., Marchini, Jonathan, Baras, Aris, Abecasis, Gonçalo R., Ferreira, Manuel A. R.
Publicado 2021

Genotyping, sequencing and analysis of 140,000 adults from Mexico City

por Ziyatdinov, Andrey, Torres, Jason, Alegre-Díaz, Jesús, Backman, Joshua, Mbatchou, Joelle, Turner, Michael, Gaynor, Sheila M., Joseph, Tyler, Zou, Yuxin, Liu, Daren, Wade, Rachel, Staples, Jeffrey, Panea, Razvan, Popov, Alex, Bai, Xiaodong, Balasubramanian, Suganthi, Habegger, Lukas, Lanche, Rouel, Lopez, Alex, Maxwell, Evan, Jones, Marcus, García-Ortiz, Humberto, Ramirez-Reyes, Raul, Santacruz-Benítez, Rogelio, Nag, Abhishek, Smith, Katherine R., Damask, Amy, Lin, Nan, Paulding, Charles, Reppell, Mark, Zöllner, Sebastian, Jorgenson, Eric, Salerno, William, Petrovski, Slavé, Overton, John, Reid, Jeffrey, Thornton, Timothy A., Abecasis, Gonçalo, Berumen, Jaime, Orozco-Orozco, Lorena, Collins, Rory, Baras, Aris, Hill, Michael R., Emberson, Jonathan R., Marchini, Jonathan, Kuri-Morales, Pablo, Tapia-Conyer, Roberto
Publicado 2023

Exome sequencing and characterization of 49,960 individuals in the UK Biobank

por Van Hout, Cristopher V., Tachmazidou, Ioanna, Backman, Joshua D., Hoffman, Joshua D., Liu, Daren, Pandey, Ashutosh K., Gonzaga-Jauregui, Claudia, Khalid, Shareef, Ye, Bin, Banerjee, Nilanjana, Li, Alexander H., O’Dushlaine, Colm, Marcketta, Anthony, Staples, Jeffrey, Schurmann, Claudia, Hawes, Alicia, Maxwell, Evan, Barnard, Leland, Lopez, Alexander, Penn, John, Habegger, Lukas, Blumenfeld, Andrew L., Bai, Xiaodong, O’Keeffe, Sean, Yadav, Ashish, Praveen, Kavita, Jones, Marcus, Salerno, William J., Chung, Wendy K., Surakka, Ida, Willer, Cristen J., Hveem, Kristian, Leader, Joseph B., Carey, David J., Ledbetter, David H., Cardon, Lon, Yancopoulos, George D., Economides, Aris, Coppola, Giovanni, Shuldiner, Alan R., Balasubramanian, Suganthi, Cantor, Michael, Nelson, Matthew R., Whittaker, John, Reid, Jeffrey G., Marchini, Jonathan, Overton, John D., Scott, Robert A., Abecasis, Gonçalo R., Yerges-Armstrong, Laura, Baras, Aris
Publicado 2020

Genome-wide analysis provides genetic evidence that ACE2 influences COVID-19 risk and yields risk scores associated with severe disease

por Horowitz, Julie E., Kosmicki, Jack A., Damask, Amy, Sharma, Deepika, Roberts, Genevieve H. L., Justice, Anne E., Banerjee, Nilanjana, Coignet, Marie V., Yadav, Ashish, Leader, Joseph B., Marcketta, Anthony, Park, Danny S., Lanche, Rouel, Maxwell, Evan, Knight, Spencer C., Bai, Xiaodong, Guturu, Harendra, Sun, Dylan, Baltzell, Asher, Kury, Fabricio S. P., Backman, Joshua D., Girshick, Ahna R., O’Dushlaine, Colm, McCurdy, Shannon R., Partha, Raghavendran, Mansfield, Adam J., Turissini, David A., Li, Alexander H., Zhang, Miao, Mbatchou, Joelle, Watanabe, Kyoko, Gurski, Lauren, McCarthy, Shane E., Kang, Hyun M., Dobbyn, Lee, Stahl, Eli, Verma, Anurag, Sirugo, Giorgio, Ritchie, Marylyn D., Jones, Marcus, Balasubramanian, Suganthi, Siminovitch, Katherine, Salerno, William J., Shuldiner, Alan R., Rader, Daniel J., Mirshahi, Tooraj, Locke, Adam E., Marchini, Jonathan, Overton, John D., Carey, David J., Habegger, Lukas, Cantor, Michael N., Rand, Kristin A., Hong, Eurie L., Reid, Jeffrey G., Ball, Catherine A., Baras, Aris, Abecasis, Gonçalo R., Ferreira, Manuel A. R.
Publicado 2022

Pan-ancestry exome-wide association analyses of COVID-19 outcomes in 586,157 individuals

por Kosmicki, Jack A., Horowitz, Julie E., Banerjee, Nilanjana, Lanche, Rouel, Marcketta, Anthony, Maxwell, Evan, Bai, Xiaodong, Sun, Dylan, Backman, Joshua D., Sharma, Deepika, Kury, Fabricio S.P., Kang, Hyun M., O’Dushlaine, Colm, Yadav, Ashish, Mansfield, Adam J., Li, Alexander H., Watanabe, Kyoko, Gurski, Lauren, McCarthy, Shane E., Locke, Adam E., Khalid, Shareef, O’Keeffe, Sean, Mbatchou, Joelle, Chazara, Olympe, Huang, Yunfeng, Kvikstad, Erika, O’Neill, Amanda, Nioi, Paul, Parker, Meg M., Petrovski, Slavé, Runz, Heiko, Szustakowski, Joseph D., Wang, Quanli, Wong, Emily, Cordova-Palomera, Aldo, Smith, Erin N., Szalma, Sandor, Zheng, Xiuwen, Esmaeeli, Sahar, Davis, Justin W., Lai, Yi-Pin, Chen, Xing, Justice, Anne E., Leader, Joseph B., Mirshahi, Tooraj, Carey, David J., Verma, Anurag, Sirugo, Giorgio, Ritchie, Marylyn D., Rader, Daniel J., Povysil, Gundula, Goldstein, David B., Kiryluk, Krzysztof, Pairo-Castineira, Erola, Rawlik, Konrad, Pasko, Dorota, Walker, Susan, Meynert, Alison, Kousathanas, Athanasios, Moutsianas, Loukas, Tenesa, Albert, Caulfield, Mark, Scott, Richard, Wilson, James F., Baillie, J. Kenneth, Butler-Laporte, Guillaume, Nakanishi, Tomoko, Lathrop, Mark, Richards, J. Brent, Jones, Marcus, Balasubramanian, Suganthi, Salerno, William, Shuldiner, Alan R., Marchini, Jonathan, Overton, John D., Habegger, Lukas, Cantor, Michael N., Reid, Jeffrey G., Baras, Aris, Abecasis, Goncalo R., Ferreira, Manuel A.R.
Publicado 2021