Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution

por Brennan, Caitriona, Salido, Rodolfo A., Belda-Ferre, Pedro, Bryant, MacKenzie, Cowart, Charles, Tiu, Maria D., González, Antonio, McDonald, Daniel, Tribelhorn, Caitlin, Zarrinpar, Amir, Knight, Rob
Publicado 2023

The molecular impact of life in an indoor environment

por Aksenov, Alexander A., Salido, Rodolfo A., Melnik, Alexey V., Brennan, Caitriona, Brejnrod, Asker, Caraballo-Rodríguez, Andrés Mauricio, Gauglitz, Julia M., Lejzerowicz, Franck, Farmer, Delphine K., Vance, Marina E., Knight, Rob, Dorrestein, Pieter C.
Publicado 2022

Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients

por Salido, Rodolfo A., Morgan, Sydney C., Rojas, Maria I., Magallanes, Celestine G., Marotz, Clarisse, DeHoff, Peter, Belda-Ferre, Pedro, Aigner, Stefan, Kado, Deborah M., Yeo, Gene W., Gilbert, Jack A., Laurent, Louise, Rohwer, Forest, Knight, Rob
Publicado 2020

The genetic basis for adaptation of model-designed syntrophic co-cultures

por Lloyd, Colton J., King, Zachary A., Sandberg, Troy E., Hefner, Ying, Olson, Connor A., Phaneuf, Patrick V., O’Brien, Edward J., Sanders, Jon G., Salido, Rodolfo A., Sanders, Karenina, Brennan, Caitriona, Humphrey, Gregory, Knight, Rob, Feist, Adam M.
Publicado 2019

Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals

por Palmu, Joonatan, Salosensaari, Aaro, Havulinna, Aki S., Cheng, Susan, Inouye, Michael, Jain, Mohit, Salido, Rodolfo A., Sanders, Karenina, Brennan, Caitriona, Humphrey, Gregory C., Sanders, Jon G., Vartiainen, Erkki, Laatikainen, Tiina, Jousilahti, Pekka, Salomaa, Veikko, Knight, Rob, Lahti, Leo, Niiranen, Teemu J.
Publicado 2020

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

por Shaffer, Justin P., Marotz, Clarisse, Belda-Ferre, Pedro, Martino, Cameron, Wandro, Stephen, Estaki, Mehrbod, Salido, Rodolfo A., Carpenter, Carolina S., Zaramela, Livia S., Minich, Jeremiah J., Bryant, MacKenzie, Sanders, Karenina, Fraraccio, Serena, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D., Miller-Montgomery, Sandrine, Knight, Rob
Publicado 2020

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

por Shaffer, Justin P, Marotz, Clarisse, Belda-Ferre, Pedro, Martino, Cameron, Wandro, Stephen, Estaki, Mehrbod, Salido, Rodolfo A, Carpenter, Carolina S, Zaramela, Livia S, Minich, Jeremiah J, Bryant, MacKenzie, Sanders, Karenina, Fraraccio, Serena, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D, Miller-Montgomery, Sandrine, Knight, Rob
Publicado 2021

Gut microbiome and atrial fibrillation—results from a large population-based study

por Palmu, Joonatan, Börschel, Christin S., Ortega-Alonso, Alfredo, Markó, Lajos, Inouye, Michael, Jousilahti, Pekka, Salido, Rodolfo A., Sanders, Karenina, Brennan, Caitriona, Humphrey, Gregory C., Sanders, Jon G., Gutmann, Friederike, Linz, Dominik, Salomaa, Veikko, Havulinna, Aki S., Forslund, Sofia K., Knight, Rob, Lahti, Leo, Niiranen, Teemu, Schnabel, Renate B.
Publicado 2023

Associations of healthy food choices with gut microbiota profiles

por Koponen, Kari K, Salosensaari, Aaro, Ruuskanen, Matti O, Havulinna, Aki S, Männistö, Satu, Jousilahti, Pekka, Palmu, Joonatan, Salido, Rodolfo, Sanders, Karenina, Brennan, Caitriona, Humphrey, Gregory C, Sanders, Jon G, Meric, Guillaume, Cheng, Susan, Inouye, Michael, Jain, Mohit, Niiranen, Teemu J, Valsta, Liisa M, Knight, Rob, Salomaa, Veikko V
Publicado 2021

Taxonomic signatures of cause-specific mortality risk in human gut microbiome

por Salosensaari, Aaro, Laitinen, Ville, Havulinna, Aki S., Meric, Guillaume, Cheng, Susan, Perola, Markus, Valsta, Liisa, Alfthan, Georg, Inouye, Michael, Watrous, Jeramie D., Long, Tao, Salido, Rodolfo A., Sanders, Karenina, Brennan, Caitriona, Humphrey, Gregory C., Sanders, Jon G., Jain, Mohit, Jousilahti, Pekka, Salomaa, Veikko, Knight, Rob, Lahti, Leo, Niiranen, Teemu
Publicado 2021

Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads

por Sanders, Jon G., Nurk, Sergey, Salido, Rodolfo A., Minich, Jeremiah, Xu, Zhenjiang Z., Zhu, Qiyun, Martino, Cameron, Fedarko, Marcus, Arthur, Timothy D., Chen, Feng, Boland, Brigid S., Humphrey, Greg C., Brennan, Caitriona, Sanders, Karenina, Gaffney, James, Jepsen, Kristen, Khosroheidari, Mahdieh, Green, Cliff, Liyanage, Marlon, Dang, Jason W., Phelan, Vanessa V., Quinn, Robert A., Bankevich, Anton, Chang, John T., Rana, Tariq M., Conrad, Douglas J., Sandborn, William J., Smarr, Larry, Dorrestein, Pieter C., Pevzner, Pavel A., Knight, Rob
Publicado 2019

SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment

por Marotz, Clarisse, Belda-Ferre, Pedro, Ali, Farhana, Das, Promi, Huang, Shi, Cantrell, Kalen, Jiang, Lingjing, Martino, Cameron, Diner, Rachel E., Rahman, Gibraan, McDonald, Daniel, Armstrong, George, Kodera, Sho, Donato, Sonya, Ecklu-Mensah, Gertrude, Gottel, Neil, Salas Garcia, Mariana C., Chiang, Leslie Y., Salido, Rodolfo A., Shaffer, Justin P., Bryant, Mac Kenzie, Sanders, Karenina, Humphrey, Greg, Ackermann, Gail, Haiminen, Niina, Beck, Kristen L., Kim, Ho-Cheol, Carrieri, Anna Paola, Parida, Laxmi, Vázquez-Baeza, Yoshiki, Torriani, Francesca J., Knight, Rob, Gilbert, Jack, Sweeney, Daniel A., Allard, Sarah M.
Publicado 2021

Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings

por Cantú, Victor J., Sanders, Karenina, Belda-Ferre, Pedro, Salido, Rodolfo A., Tsai, Rebecca, Austin, Brett, Jordan, William, Asudani, Menka, Walster, Amanda, Magallanes, Celestine G., Valentine, Holly, Manjoonian, Araz, Wijaya, Carrissa, Omaleki, Vinton, Aigner, Stefan, Baer, Nathan A., Betty, Maryann, Castro-Martínez, Anelizze, Cheung, Willi, De Hoff, Peter, Eisner, Emily, Hakim, Abbas, Lastrella, Alma L., Lawrence, Elijah S., Ngo, Toan T., Ostrander, Tyler, Plascencia, Ashley, Sathe, Shashank, Smoot, Elizabeth W., Carlin, Aaron F., Yeo, Gene W., Laurent, Louise C., Manlutac, Anna Liza, Fielding-Miller, Rebecca, Knight, Rob
Publicado 2022

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

por Marotz, Clarisse, Belda-Ferre, Pedro, Ali, Farhana, Das, Promi, Huang, Shi, Cantrell, Kalen, Jiang, Lingjing, Martino, Cameron, Diner, Rachel E., Rahman, Gibraan, McDonald, Daniel, Armstrong, George, Kodera, Sho, Donato, Sonya, Ecklu-Mensah, Gertrude, Gottel, Neil, Garcia, Mariana C. Salas, Chiang, Leslie Y., Salido, Rodolfo A., Shaffer, Justin P., Bryant, MacKenzie, Sanders, Karenina, Humphrey, Greg, Ackermann, Gail, Haiminen, Niina, Beck, Kristen L., Kim, Ho-Cheol, Carrieri, Anna Paola, Parida, Laxmi, Vázquez-Baeza, Yoshiki, Torriani, Francesca J., Knight, Rob, Gilbert, Jack A., Sweeney, Daniel A., Allard, Sarah M.
Publicado 2020

Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings

por Cantú, Victor J., Belda-Ferre, Pedro, Salido, Rodolfo A., Tsai, Rebecca, Austin, Brett, Jordan, William, Asudani, Menka, Walster, Amanda, Magallanes, Celestine G., Valentine, Holly, Manjoonian, Araz, Wijaya, Carrissa, Omaleki, Vinton, Sanders, Karenina, Aigner, Stefan, Baer, Nathan A., Betty, Maryann, Castro-Martínez, Anelizze, Cheung, Willi, Crescini, Evelyn S., De Hoff, Peter, Eisner, Emily, Hakim, Abbas, Kapadia, Bhavika, Lastrella, Alma L., Lawrence, Elijah S., Ngo, Toan T., Ostrander, Tyler, Sathe, Shashank, Seaver, Phoebe, Smoot, Elizabeth W., Carlin, Aaron F., Yeo, Gene W., Laurent, Louise C., Manlutac, Anna Liza, Fielding-Miller, Rebecca, Knight, Rob
Publicado 2022

SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp.

por Cantú, Victor J, Salido, Rodolfo A., Huang, Shi, Rahman, Gibraan, Tsai, Rebecca, Valentine, Holly, Magallanes, Celestine G., Aigner, Stefan, Baer, Nathan A., Barber, Tom, Belda-Ferre, Pedro, Betty, Maryann, Bryant, MacKenzie, Maya, Martin Casas, Castro-Martínez, Anelizze, Chacón, Marisol, Cheung, Willi, Crescini, Evelyn S., De Hoff, Peter, Eisner, Emily, Farmer, Sawyer, Hakim, Abbas, Kohn, Laura, Lastrella, Alma L., Lawrence, Elijah S., Morgan, Sydney C., Ngo, Toan T., Nouri, Alhakam, Ostrander, R Tyler, Plascencia, Ashley, Ruiz, Christopher A., Sathe, Shashank, Seaver, Phoebe, Shwartz, Tara, Smoot, Elizabeth W., Valles, Thomas, Yeo, Gene W., Laurent, Louise C., Fielding-Miller, Rebecca, Knight, Rob
Publicado 2021

SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp.

por Cantú, Victor J., Salido, Rodolfo A., Huang, Shi, Rahman, Gibraan, Tsai, Rebecca, Valentine, Holly, Magallanes, Celestine G., Aigner, Stefan, Baer, Nathan A., Barber, Tom, Belda-Ferre, Pedro, Betty, Maryann, Bryant, MacKenzie, Casas Maya, Martín, Castro-Martínez, Anelizze, Chacón, Marisol, Cheung, Willi, Crescini, Evelyn S., De Hoff, Peter, Eisner, Emily, Farmer, Sawyer, Hakim, Abbas, Kohn, Laura, Lastrella, Alma L., Lawrence, Elijah S., Morgan, Sydney C., Ngo, Toan T., Nouri, Alhakam, Plascencia, Ashley, Ruiz, Christopher A., Sathe, Shashank, Seaver, Phoebe, Shwartz, Tara, Smoot, Elizabeth W., Ostrander, R. Tyler, Valles, Thomas, Yeo, Gene W., Laurent, Louise C., Fielding-Miller, Rebecca, Knight, Rob
Publicado 2022

Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence

por Salido, Rodolfo A., Cantú, Victor J., Clark, Alex E., Leibel, Sandra L., Foroughishafiei, Anahid, Saha, Anushka, Hakim, Abbas, Nouri, Alhakam, Lastrella, Alma L., Castro-Martínez, Anelizze, Plascencia, Ashley, Kapadia, Bhavika, Xia, Bing, Ruiz, Christopher, Marotz, Clarisse A., Maunder, Daniel, Lawrence, Elijah S., Smoot, Elizabeth W., Eisner, Emily, Crescini, Evelyn S., Kohn, Laura, Vargas, Lizbeth Franco, Chacón, Marisol, Betty, Maryann, Machnicki, Michal, Wu, Min Yi, Baer, Nathan A., Belda-Ferre, Pedro, Hoff, Peter De, Seaver, Phoebe, Ostrander, R. Tyler, Tsai, Rebecca, Sathe, Shashank, Aigner, Stefan, Morgan, Sydney C., Ngo, Toan T., Barber, Tom, Cheung, Willi, Carlin, Aaron F., Yeo, Gene W., Laurent, Louise C., Fielding-Miller, Rebecca, Knight, Rob
Publicado 2021

Wastewater and surface monitoring to detect COVID-19 in elementary school settings: The Safer at School Early Alert project

por Fielding-Miller, Rebecca, Karthikeyan, Smruthi, Gaines, Tommi, Garfein, Richard S., Salido, Rodolfo A., Cantu, Victor J., Kohn, Laura, Martin, Natasha K, Wynn, Adriane, Wijaya, Carrissa, Flores, Marlene, Omaleki, Vinton, Majnoonian, Araz, Gonzalez-Zuniga, Patricia, Nguyen, Megan, Vo, Anh V, Le, Tina, Duong, Dawn, Hassani, Ashkan, Tweeten, Samantha, Jepsen, Kristen, Henson, Benjamin, Hakim, Abbas, Birmingham, Amanda, De Hoff, Peter, Mark, Adam M., Nasamran, Chanond A, Rosenthal, Sara Brin, Moshiri, Niema, Fisch, Kathleen M., Humphrey, Greg, Farmer, Sawyer, Tubb, Helena M., Valles, Tommy, Morris, Justin, Kang, Jaeyoung, Khaleghi, Behnam, Young, Colin, Akel, Ameen D, Eilert, Sean, Eno, Justin, Curewitz, Ken, Laurent, Louise C, Rosing, Tajana, Knight, Rob
Publicado 2023

Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs

por Salido, Rodolfo A., Cantú, Victor J., Clark, Alex E., Leibel, Sandra L., Foroughishafiei, Anahid, Saha, Anushka, Hakim, Abbas, Nouri, Alhakam, Lastrella, Alma L., Castro-Martínez, Anelizze, Plascencia, Ashley, Kapadia, Bhavika K., Xia, Bing, Ruiz, Christopher A., Marotz, Clarisse A., Maunder, Daniel, Lawrence, Elijah S., Smoot, Elizabeth W., Eisner, Emily, Crescini, Evelyn S., Kohn, Laura, Franco Vargas, Lizbeth, Chacón, Marisol, Betty, Maryann, Machnicki, Michal, Wu, Min Yi, Baer, Nathan A., Belda-Ferre, Pedro, De Hoff, Peter, Seaver, Phoebe, Ostrander, R. Tyler, Tsai, Rebecca, Sathe, Shashank, Aigner, Stefan, Morgan, Sydney C., Ngo, Toan T., Barber, Tom, Cheung, Willi, Carlin, Aaron F., Yeo, Gene W., Laurent, Louise C., Fielding-Miller, Rebecca, Knight, Rob
Publicado 2021