Indexing labeled sequences

por Rocher, Tatiana, Giraud, Mathieu, Salson, Mikaël
Publicado 2018

CRAC: an integrated approach to the analysis of RNA-seq reads

por Philippe, Nicolas, Salson, Mikaël, Commes, Thérèse, Rivals, Eric
Publicado 2013

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets

por Marchet, Camille, Iqbal, Zamin, Gautheret, Daniel, Salson, Mikaël, Chikhi, Rayan
Publicado 2020

Querying large read collections in main memory: a versatile data structure

por Philippe, Nicolas, Salson, Mikaël, Lecroq, Thierry, Léonard, Martine, Commes, Thérèse, Rivals, Eric
Publicado 2011

Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing

por Duez, Marc, Giraud, Mathieu, Herbert, Ryan, Rocher, Tatiana, Salson, Mikaël, Thonier, Florian
Publicado 2016

Correction: Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing

por Duez, Marc, Giraud, Mathieu, Herbert, Ryan, Rocher, Tatiana, Salson, Mikaël, Thonier, Florian
Publicado 2017

Data structures based on k-mers for querying large collections of sequencing data sets

por Marchet, Camille, Boucher, Christina, Puglisi, Simon J., Medvedev, Paul, Salson, Mikaël, Chikhi, Rayan
Publicado 2021

SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines

por Audoux, Jérôme, Salson, Mikaël, Grosset, Christophe F., Beaumeunier, Sacha, Holder, Jean-Marc, Commes, Thérèse, Philippe, Nicolas
Publicado 2017

Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing

por Giraud, Mathieu, Salson, Mikaël, Duez, Marc, Villenet, Céline, Quief, Sabine, Caillault, Aurélie, Grardel, Nathalie, Roumier, Christophe, Preudhomme, Claude, Figeac, Martin
Publicado 2014

DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

por Audoux, Jérôme, Philippe, Nicolas, Chikhi, Rayan, Salson, Mikaël, Gallopin, Mélina, Gabriel, Marc, Le Coz, Jérémy, Drouineau, Emilie, Commes, Thérèse, Gautheret, Daniel
Publicado 2017

Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r

por Boudry, Augustin, Darmon, Sasha, Duployez, Nicolas, Figeac, Martin, Geffroy, Sandrine, Bucci, Maxime, Celli-Lebras, Karine, Duchmann, Matthieu, Joudinaud, Romane, Fenwarth, Laurène, Nibourel, Olivier, Goursaud, Laure, Itzykson, Raphael, Dombret, Hervé, Hunault, Mathilde, Preudhomme, Claude, Salson, Mikaël
Publicado 2022

Publisher Correction: Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r

por Boudry, Augustin, Darmon, Sasha, Duployez, Nicolas, Figeac, Martin, Geffroy, Sandrine, Bucci, Maxime, Celli-Lebras, Karine, Duchmann, Matthieu, Joudinaud, Romane, Fenwarth, Laurène, Nibourel, Olivier, Goursaud, Laure, Itzykson, Raphael, Dombret, Hervé, Hunault, Mathilde, Preudhomme, Claude, Salson, Mikaël
Publicado 2022

Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NG...

por Brüggemann, Monika, Kotrová, Michaela, Knecht, Henrik, Bartram, Jack, Boudjogrha, Myriam, Bystry, Vojtech, Fazio, Grazia, Froňková, Eva, Giraud, Mathieu, Grioni, Andrea, Hancock, Jeremy, Herrmann, Dietrich, Jiménez, Cristina, Krejci, Adam, Moppett, John, Reigl, Tomas, Salson, Mikael, Scheijen, Blanca, Schwarz, Martin, Songia, Simona, Svaton, Michael, van Dongen, Jacques J. M., Villarese, Patrick, Wakeman, Stephanie, Wright, Gary, Cazzaniga, Giovanni, Davi, Frédéric, García-Sanz, Ramón, Gonzalez, David, Groenen, Patricia J. T. A., Hummel, Michael, Macintyre, Elizabeth A., Stamatopoulos, Kostas, Pott, Christiane, Trka, Jan, Darzentas, Nikos, Langerak, Anton W.
Publicado 2019