Complete Genome Sequence of Ornithobacterium hominis Type Strain MSHR-COH1 (ATCC TSD-185)

por Salter, Susannah J., Marsh, Robyn L., Parkhill, Julian
Publicado 2023

Milk microbiome in dairy cattle and the challenges of low microbial biomass and exogenous contamination

por Pollock, Jolinda, Salter, Susannah J., Nixon, Rebecca, Hutchings, Michael R.
Publicado 2021

The Human Blood Fluke, Schistosoma mansoni, Harbors Bacteria Throughout the Parasite's Life Cycle

por Formenti, Fabio, Cortés, Alba, Deiana, Michela, Salter, Susannah, Parkhill, Julian, Berriman, Matt, Rinaldi, Gabriel, Cantacessi, Cinzia
Publicado 2023

Patent Human Infections with the Whipworm, Trichuris trichiura, Are Not Associated with Alterations in the Faecal Microbiota

por Cooper, Philip, Walker, Alan W., Reyes, Jorge, Chico, Martha, Salter, Susannah J., Vaca, Maritza, Parkhill, Julian
Publicado 2013

Genetic Stabilization of the Drug-Resistant PMEN1 Pneumococcus Lineage by Its Distinctive DpnIII Restriction-Modification System

por Eutsey, Rory A., Powell, Evan, Dordel, Janina, Salter, Susannah J., Clark, Tyson A., Korlach, Jonas, Ehrlich, Garth D., Hiller, N. Luisa
Publicado 2015

A longitudinal study of the infant nasopharyngeal microbiota: The effects of age, illness and antibiotic use in a cohort of South East Asian children

por Salter, Susannah J., Turner, Claudia, Watthanaworawit, Wanitda, de Goffau, Marcus C., Wagner, Josef, Parkhill, Julian, Bentley, Stephen D., Goldblatt, David, Nosten, Francois, Turner, Paul
Publicado 2017

Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination

por Mostowy, Rafał J., Croucher, Nicholas J., De Maio, Nicola, Chewapreecha, Claire, Salter, Susannah J., Turner, Paul, Aanensen, David M., Bentley, Stephen D., Didelot, Xavier, Fraser, Christophe
Publicado 2017

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

por Salter, Susannah J, Cox, Michael J, Turek, Elena M, Calus, Szymon T, Cookson, William O, Moffatt, Miriam F, Turner, Paul, Parkhill, Julian, Loman, Nicholas J, Walker, Alan W
Publicado 2014

'Candidatus Ornithobacterium hominis': insights gained from draft genomes obtained from nasopharyngeal swabs

por Salter, Susannah J., Scott, Paul, Page, Andrew J., Tracey, Alan, de Goffau, Marcus C., Cormie, Claire, Ochoa-Montaño, Bernardo, Ling, Clare L., Tangmanakit, Jiraporn, Turner, Paul, Parkhill, Julian
Publicado 2019

Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes

por Chewapreecha, Claire, Marttinen, Pekka, Croucher, Nicholas J., Salter, Susannah J., Harris, Simon R., Mather, Alison E., Hanage, William P., Goldblatt, David, Nosten, Francois H., Turner, Claudia, Turner, Paul, Bentley, Stephen D., Parkhill, Julian
Publicado 2014

Freshwater monitoring by nanopore sequencing

por Urban, Lara, Holzer, Andre, Baronas, J Jotautas, Hall, Michael B, Braeuninger-Weimer, Philipp, Scherm, Michael J, Kunz, Daniel J, Perera, Surangi N, Martin-Herranz, Daniel E, Tipper, Edward T, Salter, Susannah J, Stammnitz, Maximilian R
Publicado 2021

Pneumococcal within-host diversity during colonization, transmission and treatment

por Tonkin-Hill, Gerry, Ling, Clare, Chaguza, Chrispin, Salter, Susannah J., Hinfonthong, Pattaraporn, Nikolaou, Elissavet, Tate, Natalie, Pastusiak, Andrzej, Turner, Claudia, Chewapreecha, Claire, Frost, Simon D. W., Corander, Jukka, Croucher, Nicholas J., Turner, Paul, Bentley, Stephen D.
Publicado 2022

Dense genomic sampling identifies highways of pneumococcal recombination

por Chewapreecha, Claire, Harris, Simon R, Croucher, Nicholas J, Turner, Claudia, Marttinen, Pekka, Cheng, Lu, Pessia, Alberto, Aanensen, David M, Mather, Alison E, Page, Andrew J, Salter, Susannah J., Harris, David, Nosten, Francois, Goldblatt, David, Corander, Jukka, Parkhill, Julian, Turner, Paul, Bentley, Stephen D
Publicado 2014

Dominant Role of Nucleotide Substitution in the Diversification of Serotype 3 Pneumococci over Decades and during a Single Infection

por Croucher, Nicholas J., Mitchell, Andrea M., Gould, Katherine A., Inverarity, Donald, Barquist, Lars, Feltwell, Theresa, Fookes, Maria C., Harris, Simon R., Dordel, Janina, Salter, Susannah J., Browall, Sarah, Zemlickova, Helena, Parkhill, Julian, Normark, Staffan, Henriques-Normark, Birgitta, Hinds, Jason, Mitchell, Tim J., Bentley, Stephen D.
Publicado 2013

Global Phylogenomic Analysis of Nonencapsulated Streptococcus pneumoniae Reveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages

por Hilty, Markus, Wüthrich, Daniel, Salter, Susannah J., Engel, Hansjürg, Campbell, Samuel, Sá-Leão, Raquel, de Lencastre, Hermínia, Hermans, Peter, Sadowy, Ewa, Turner, Paul, Chewapreecha, Claire, Diggle, Mathew, Pluschke, Gerd, McGee, Lesley, Köseoğlu Eser, Özgen, Low, Donald E., Smith-Vaughan, Heidi, Endimiani, Andrea, Küffer, Marianne, Dupasquier, Mélanie, Beaudoing, Emmanuel, Weber, Johann, Bruggmann, Rémy, Hanage, William P., Parkhill, Julian, Hathaway, Lucy J., Mühlemann, Kathrin, Bentley, Stephen D.
Publicado 2014