Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns

por Tian, Wenhong, Samatova, Nagiza F.
Publicado 2013

Functional Annotation of Hierarchical Modularity

por Padmanabhan, Kanchana, Wang, Kuangyu, Samatova, Nagiza F.
Publicado 2012

BioDEAL: community generation of biological annotations

por Breimyer, Paul, Green, Nathan, Kumar, Vinay, Samatova, Nagiza F
Publicado 2009

Practical graph mining with R

por Samatova, Nagiza F, Hendrix, William, Jenkins, John, Padmanabhan, Kanchana, Chakraborty, Arpan
Publicado 2014

Toward Personalized Network Biomarkers in Alzheimer's Disease: Computing Individualized Genomic and Protein Crosstalk Maps

por Padmanabhan, Kanchana, Shpanskaya, Katie, Bello, Gonzalo, Doraiswamy, P. Murali, Samatova, Nagiza F.
Publicado 2017

In-silico identification of phenotype-biased functional modules

por Padmanabhan, Kanchana, Wilson, Kevin, Rocha, Andrea M, Wang, Kuangyu, Mihelcic, James R, Samatova, Nagiza F
Publicado 2012

DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules

por Hendrix, Willam, Rocha, Andrea M, Padmanabhan, Kanchana, Choudhary, Alok, Scott, Kathleen, Mihelcic, James R, Samatova, Nagiza F
Publicado 2011

Spice: discovery of phenotype-determining component interplays

por Chen, Zhengzhang, Padmanabhan, Kanchana, Rocha, Andrea M, Shpanskaya, Yekaterina, Mihelcic, James R, Scott, Kathleen, Samatova, Nagiza F
Publicado 2012

Efficient α, β-motif finder for identification of phenotype-related functional modules

por Schmidt, Matthew C, Rocha, Andrea M, Padmanabhan, Kanchana, Chen, Zhengzhang, Scott, Kathleen, Mihelcic, James R, Samatova, Nagiza F
Publicado 2011

Phenotype Fingerprinting Suggests the Involvement of Single-Genotype Consortia in Degradation of Aromatic Compounds by Rhodopseudomonas palustris

por Karpinets, Tatiana V., Pelletier, Dale A., Pan, Chongle, Uberbacher, Edward C., Melnichenko, Galina V., Hettich, Robert L., Samatova, Nagiza F.
Publicado 2009

NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems

por Schmidt, Matthew C., Rocha, Andrea M., Padmanabhan, Kanchana, Shpanskaya, Yekaterina, Banfield, Jill, Scott, Kathleen, Mihelcic, James R., Samatova, Nagiza F.
Publicado 2012

Impact of Pretreated Switchgrass and Biomass Carbohydrates on Clostridium thermocellum ATCC 27405 Cellulosome Composition: A Quantitative Proteomic Analysis

por Raman, Babu, Pan, Chongle, Hurst, Gregory B., Rodriguez, Miguel, McKeown, Catherine K., Lankford, Patricia K., Samatova, Nagiza F., Mielenz, Jonathan R.
Publicado 2009

Sex Differences in Cognitive Decline in Subjects with High Likelihood of Mild Cognitive Impairment due to Alzheimer’s disease

por Sohn, Dongwha, Shpanskaya, Katie, Lucas, Joseph E., Petrella, Jeffrey R., Saykin, Andrew J., Tanzi, Rudolph E., Samatova, Nagiza F., Doraiswamy, P. Murali
Publicado 2018

Complex biomarker discovery in neuroimaging data: Finding a needle in a haystack()

por Atluri, Gowtham, Padmanabhan, Kanchana, Fang, Gang, Steinbach, Michael, Petrella, Jeffrey R., Lim, Kelvin, MacDonald, Angus, Samatova, Nagiza F., Doraiswamy, P. Murali, Kumar, Vipin
Publicado 2013

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry

por Pan, Chongle, Park, Byung H, McDonald, William H, Carey, Patricia A, Banfield, Jillian F, VerBerkmoes, Nathan C, Hettich, Robert L, Samatova, Nagiza F
Publicado 2010

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions

por Karpinets, Tatiana V., Romine, Margaret F., Schmoyer, Denise D., Kora, Guruprasad H., Syed, Mustafa H., Leuze, Michael R., Serres, Margrethe H., Park, Byung H., Samatova, Nagiza F., Uberbacher, Edward C.
Publicado 2010