Noncanonical binding of transcription factors: time to revisit specificity?

por Samee, Md. Abul Hassan
Publicado 2023

Structural underpinnings of mutation rate variations in the human genome

por Liu, Zian, Samee, Md Abul Hassan
Publicado 2023

Quantitative Modeling of a Gene's Expression from Its Intergenic Sequence

por Samee, Md. Abul Hassan, Sinha, Saurabh
Publicado 2014

Systematic identification of non-canonical transcription factor motifs

por Chumpitaz-Diaz, Luis, Samee, Md. Abul Hassan, Pollard, Katherine S.
Publicado 2021

Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression

por He, Xin, Samee, Md. Abul Hassan, Blatti, Charles, Sinha, Saurabh
Publicado 2010

NoVaTeST: identifying genes with location-dependent noise variance in spatial transcriptomics data

por Abrar, Mohammed Abid, Kaykobad, M, Rahman, M Saifur, Samee, Md Abul Hassan
Publicado 2023

DeepBend: An interpretable model of DNA bendability

por Khan, Samin Rahman, Sakib, Sadman, Rahman, M. Sohel, Samee, Md. Abul Hassan
Publicado 2023

Dual-Mode Tumor Imaging Using Probes That Are Responsive to Hypoxia-Induced Pathological Conditions

por Subasinghe, S. A. Amali S., Pautler, Robia G., Samee, Md. Abul Hassan, Yustein, Jason T., Allen, Matthew J.
Publicado 2022

Simulations of Enhancer Evolution Provide Mechanistic Insights into Gene Regulation

por Duque, Thyago, Samee, Md. Abul Hassan, Kazemian, Majid, Pham, Hannah N., Brodsky, Michael H., Sinha, Saurabh
Publicado 2014

Evidence for Deep Regulatory Similarities in Early Developmental Programs across Highly Diverged Insects

por Kazemian, Majid, Suryamohan, Kushal, Chen, Jia-Yu, Zhang, Yinan, Samee, Md. Abul Hassan, Halfon, Marc S., Sinha, Saurabh
Publicado 2014

ScribbleDom: using scribble-annotated histology images to identify domains in spatial transcriptomics data

por Rahman, Mohammad Nuwaisir, Noman, Abdullah Al, Turza, Abir Mohammad, Abrar, Mohammed Abid, Samee, Md Abul Hassan, Rahman, M Saifur
Publicado 2023

Decoding the PITX2-controlled genetic network in atrial fibrillation

por Steimle, Jeffrey D., Grisanti Canozo, Francisco J., Park, Minjun, Kadow, Zachary A., Samee, Md. Abul Hassan, Martin, James F.
Publicado 2022

Multinomial Convolutions for Joint Modeling of Regulatory Motifs and Sequence Activity Readouts

por Park, Minjun, Singh, Salvi, Khan, Samin Rahman, Abrar, Mohammed Abid, Grisanti, Francisco, Rahman, M. Sohel, Samee, Md. Abul Hassan
Publicado 2022

Endothelial cells adopt a pro-reparative immune responsive signature during cardiac injury

por Long, Hali, Steimle, Jeffrey D, Grisanti Canozo, Francisco Jose, Kim, Jong Hwan, Li, Xiao, Morikawa, Yuka, Park, Minjun, Turaga, Diwakar, Adachi, Iki, Wythe, Joshua D, Samee, Md Abul Hassan, Martin, James F
Publicado 2023