Loss of BAP1 as a candidate predictive biomarker for immunotherapy of mesothelioma

por Ladanyi, Marc, Sanchez Vega, Francisco, Zauderer, Marjorie
Publicado 2019

The Emergence of Pan-Cancer CIMP and Its Elusive Interpretation

por Miller, Brendan F., Sánchez-Vega, Francisco, Elnitski, Laura
Publicado 2016

Pan-cancer stratification of solid human epithelial tumors and cancer cell lines reveals commonalities and tissue-specific features of the CpG island methylator phenotype

por Sánchez-Vega, Francisco, Gotea, Valer, Margolin, Gennady, Elnitski, Laura
Publicado 2015

CpG island methylator phenotype in adenocarcinomas from the digestive tract: Methods, conclusions, and controversies

por Sánchez-Vega, Francisco, Gotea, Valer, Chen, Yun-Ching, Elnitski, Laura
Publicado 2017

A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers

por Şenbabaoğlu, Yasin, Sümer, Selçuk Onur, Sánchez-Vega, Francisco, Bemis, Debra, Ciriello, Giovanni, Schultz, Nikolaus, Sander, Chris
Publicado 2016

Identifying Diagnostic MicroRNAs and Investigating Their Biological Implications in Rectal Cancer

por Kim, Jin K., Qu, Xuan, Chen, Chin-Tung, Smith, J. Joshua, Sanchez-Vega, Francisco, Garcia-Aguilar, Julio
Publicado 2021

The genomic landscape of carcinomas with mucinous differentiation

por Nguyen, Bastien, Sanchez-Vega, Francisco, Fong, Christopher J., Chatila, Walid K., Boroujeni, Amir Momeni, Pareja, Fresia, Weigelt, Britta, Sotiriou, Christos, Larsimont, Denis, Reis-Filho, Jorge S., Desmedt, Christine, Schultz, Nikolaus
Publicado 2021

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

por Way, Gregory P., Sanchez-Vega, Francisco, La, Konnor, Armenia, Joshua, Chatila, Walid K., Luna, Augustin, Sander, Chris, Cherniack, Andrew D., Mina, Marco, Ciriello, Giovanni, Schultz, Nikolaus, Sanchez, Yolanda, Greene, Casey S.
Publicado 2018

The Emerging Importance of Tumor Genomics in Operable Non-Small Cell Lung Cancer

por Lengel, Harry B., Connolly, James G., Jones, Gregory D., Caso, Raul, Zhou, Jian, Sanchez-Vega, Francisco, Mastrogiacomo, Brooke, Isbell, James M., Li, Bob T., Liu, Yuan, Rekhtman, Natasha, Jones, David R.
Publicado 2021

Rectal Cancer after Prostate Radiation: A Complex and Controversial Disease

por Omer, Dana M., Thompson, Hannah M., Verheij, Floris S., Yuval, Jonathan B., Rosen, Roni, Beets, Nathalie R. A., Luthra, Anisha, Romesser, Paul B., Paty, Philip B., Garcia-Aguilar, Julio, Sanchez-Vega, Francisco
Publicado 2023

Recurrent, truncating SOX9 mutations are associated with SOX9 overexpression, KRAS mutation, and TP53 wild type status in colorectal carcinoma

por Javier, Breanna M., Yaeger, Rona, Wang, Lu, Sanchez-Vega, Francisco, Zehir, Ahmet, Middha, Sumit, Sadowska, Justyna, Vakiani, Efsevia, Shia, Jinru, Klimstra, David, Ladanyi, Marc, Iacobuzio-Donahue, Christine A., Hechtman, Jaclyn F.
Publicado 2016

KMT2C mediates the estrogen dependence of breast cancer through regulation of ERα enhancer function

por Gala, Kinisha, Li, Qing, Sinha, Amit, Razavi, Pedram, Dorso, Madeline, Sanchez-Vega, Francisco, Chung, Young Rock, Hendrickson, Ronald, Hsieh, James J., Berger, Michael, Schultz, Nikolaus, Pastore, Alessandro, Abdel-Wahab, Omar, Chandarlapaty, Sarat
Publicado 2018

Preoperative clinical and tumor genomic features associated with pathologic lymph node metastasis in clinical stage I and II lung adenocarcinoma

por Caso, Raul, Connolly, James G., Zhou, Jian, Tan, Kay See, Choi, James J., Jones, Gregory D., Mastrogiacomo, Brooke, Sanchez-Vega, Francisco, Nguyen, Bastien, Rocco, Gaetano, Molena, Daniela, Sihag, Smita, Adusumilli, Prasad S., Bott, Matthew J., Jones, David R.
Publicado 2021

CDK4/6 or MAPK blockade enhances efficacy of EGFR inhibition in oesophageal squamous cell carcinoma

por Zhou, Jin, Wu, Zhong, Wong, Gabrielle, Pectasides, Eirini, Nagaraja, Ankur, Stachler, Matthew, Zhang, Haikuo, Chen, Ting, Zhang, Haisheng, Liu, Jie Bin, Xu, Xinsen, Sicinska, Ewa, Sanchez-Vega, Francisco, Rustgi, Anil K., Diehl, J. Alan, Wong, Kwok-Kin, Bass, Adam J.
Publicado 2017

Early TP53 Alterations Engage Environmental Exposures to Promote Gastric Premalignancy in an Integrative Mouse Model

por Sethi, Nilay S., Kikuchi, Osamu, Duronio, Gina, Stachler, Matthew D., McFarland, James M., Ferrer-Luna, Ruben, Zhang, Yanxi, Bao, Chunyang, Bronson, Roderick, Patil, Deepa, Sanchez-Vega, Francisco, Liu, Jie-Bin, Sicinska, Ewa, Lazaro, Jean-Bernard, Ligon, Keith L., Beroukhim, Rameen, Bass, Adam J.
Publicado 2020

Genomic stratification beyond Ras/B‐Raf in colorectal liver metastasis patients treated with hepatic arterial infusion

por Smith, J. Joshua, Chatila, Walid K., Sanchez‐Vega, Francisco, Datta, Jashodeep, Connell, Louise C., Szeglin, Bryan C., Basunia, Azfar, Boucher, Taryn M., Hauser, Haley, Wasserman, Isaac, Wu, Chao, Cercek, Andrea, Hechtman, Jaclyn F., Madden, Chris, Jarnagin, William R., Garcia‐Aguilar, Julio, D'Angelica, Michael I., Yaeger, Rona, Schultz, Nikolaus, Kemeny, Nancy E.
Publicado 2019

Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer

por Hoadley, Katherine A., Yau, Christina, Hinoue, Toshinori, Wolf, Denise M., Lazar, Alexander J., Drill, Esther, Shen, Ronglai, Taylor, Alison M., Cherniack, Andrew D., Thorsson, Vésteinn, Akbani, Rehan, Bowlby, Reanne, Wong, Christopher K., Wiznerowicz, Maciej, Sanchez-Vega, Francisco, Robertson, A. Gordon, Schneider, Barbara G., Lawrence, Michael S., Noushmehr, Houtan, Malta, Tathiane M., Stuart, Joshua M., Benz, Christopher C., Laird, Peter W.
Publicado 2018

KRAS mutant rectal cancer cells interact with surrounding fibroblasts to deplete the extracellular matrix

por Kim, Jin K., Marco, Michael R., Choi, Seo‐Hyun, Qu, Xuan, Chen, Chin‐Tung, Elkabets, Moshe, Fairchild, Lauren, Chow, Oliver, Barriga, Francisco M., Dow, Lukas E., O’Rourke, Kevin, Szeglin, Bryan, Yarilin, Dmitry, Fujisawa, Sho, Manova‐Todorova, Katia, Paty, Philip B., Shia, Jinru, Leslie, Christina, Joshua Smith, J., Lowe, Scott, Pelossof, Raphael, Sanchez‐Vega, Francisco, Garcia‐Aguilar, Julio
Publicado 2021

Abnormal oxidative metabolism in a quiet genomic background underlies clear cell papillary renal cell carcinoma

por Xu, Jianing, Reznik, Ed, Lee, Ho-Joon, Gundem, Gunes, Jonsson, Philip, Sarungbam, Judy, Bialik, Anna, Sanchez-Vega, Francisco, Creighton, Chad J, Hoekstra, Jake, Zhang, Li, Sajjakulnukit, Peter, Kremer, Daniel, Tolstyka, Zachary, Casuscelli, Jozefina, Stirdivant, Steve, Tang, Jie, Schultz, Nikolaus, Jeng, Paul, Dong, Yiyu, Su, Wenjing, Cheng, Emily H, Russo, Paul, Coleman, Jonathan A, Papaemmanuil, Elli, Chen, Ying-Bei, Reuter, Victor E, Sander, Chris, Kennedy, Scott R, Hsieh, James J, Lyssiotis, Costas A, Tickoo, Satish K, Hakimi, A Ari
Publicado 2019

Genomic Features of Response to Combination Immunotherapy in Patients with Advanced Non-Small-Cell Lung Cancer

por Hellmann, Matthew D., Nathanson, Tavi, Rizvi, Hira, Creelan, Benjamin C., Sanchez-Vega, Francisco, Ahuja, Arun, Ni, Ai, Novik, Jacki B., Mangarin, Levi M.B., Abu-Akeel, Mohsen, Liu, Cailian, Sauter, Jennifer L., Rekhtman, Natasha, Chang, Eliza, Callahan, Margaret K., Chaft, Jamie E., Voss, Martin H., Tenet, Megan, Li, Xue-Mei, Covello, Kelly, Renninger, Andrea, Vitazka, Patrik, Geese, William J., Borghaei, Hossein, Rudin, Charles M., Antonia, Scott J., Swanton, Charles, Hammerbacher, Jeff, Merghoub, Taha, McGranahan, Nicholas, Snyder, Alexandra, Wolchok, Jedd D.
Publicado 2018