A step-by-step guide to analyzing CAGE data using R/Bioconductor

por Thodberg, Malte, Sandelin, Albin
Publicado 2019

TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes

por Ivanov, Maxim, Sandelin, Albin, Marquardt, Sebastian
Publicado 2021

Publisher Correction to: TrancriptomeReconstructoR: data‑driven annotation of complex transcriptomes

por Ivanov, Maxim, Sandelin, Albin, Marquardt, Sebastian
Publicado 2021

Discovery of Regulatory Elements is Improved by a Discriminatory Approach

por Valen, Eivind, Sandelin, Albin, Winther, Ole, Krogh, Anders
Publicado 2009

Multivariate Hawkes process models of the occurrence of regulatory elements

por Carstensen, Lisbeth, Sandelin, Albin, Winther, Ole, Hansen, Niels R
Publicado 2010

Systematic Clustering of Transcription Start Site Landscapes

por Zhao, Xiaobei, Valen, Eivind, Parker, Brian J., Sandelin, Albin
Publicado 2011

Computational identification of signals predictive for nuclear RNA exosome degradation pathway targeting

por Wu, Mengjun, Schmid, Manfred, Jensen, Torben Heick, Sandelin, Albin
Publicado 2022

spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data

por Vitting-Seerup, Kristoffer, Porse, Bo Torben, Sandelin, Albin, Waage, Johannes
Publicado 2014

CAGEfightR: analysis of 5′-end data using R/Bioconductor

por Thodberg, Malte, Thieffry, Axel, Vitting-Seerup, Kristoffer, Andersson, Robin, Sandelin, Albin
Publicado 2019

Identification of conserved regulatory elements by comparative genome analysis

por Lenhard, Boris, Sandelin, Albin, Mendoza, Luis, Engström, Pär, Jareborg, Niclas, Wasserman, Wyeth W
Publicado 2003

Cross species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites

por Schmidt, Søren F, Jørgensen, Mette, Chen, Yun, Nielsen, Ronni, Sandelin, Albin, Mandrup, Susanne
Publicado 2011

Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters

por Ponjavic, Jasmina, Lenhard, Boris, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Sandelin, Albin
Publicado 2006

Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury

por Ryge, Jesper, Winther, Ole, Wienecke, Jacob, Sandelin, Albin, Westerdahl, Ann-Charlotte, Hultborn, Hans, Kiehn, Ole
Publicado 2010

Cancer Cell Acid Adaptation Gene Expression Response Is Correlated to Tumor-Specific Tissue Expression Profiles and Patient Survival

por Yao, Jiayi, Czaplinska, Dominika, Ialchina, Renata, Schnipper, Julie, Liu, Bin, Sandelin, Albin, Pedersen, Stine Falsig
Publicado 2020

PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters

por Preker, Pascal, Almvig, Kristina, Christensen, Marianne S., Valen, Eivind, Mapendano, Christophe K., Sandelin, Albin, Jensen, Torben Heick
Publicado 2011

Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data

por Chen, Yun, Jørgensen, Mette, Kolde, Raivo, Zhao, Xiaobei, Parker, Brian, Valen, Eivind, Wen, Jiayu, Sandelin, Albin
Publicado 2011

Dynamic usage of transcription start sites within core promoters

por Kawaji, Hideya, Frith, Martin C, Katayama, Shintaro, Sandelin, Albin, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide
Publicado 2006

Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes

por Lykke-Andersen, Søren, Chen, Yun, Ardal, Britt R., Lilje, Berit, Waage, Johannes, Sandelin, Albin, Jensen, Torben Heick
Publicado 2014

A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

por Vlieghe, Dominique, Sandelin, Albin, De Bleser, Pieter J., Vleminckx, Kris, Wasserman, Wyeth W., van Roy, Frans, Lenhard, Boris
Publicado 2006

PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave

por Thieffry, Axel, López-Márquez, Diego, Bornholdt, Jette, Malekroudi, Mojgan Gholami, Bressendorff, Simon, Barghetti, Andrea, Sandelin, Albin, Brodersen, Peter
Publicado 2022