On single and multiple models of protein families for the detection of remote sequence relationships

por Casbon, James A, Saqi, Mansoor AS
Publicado 2006

S4: structure-based sequence alignments of SCOP superfamilies

por Casbon, James, Saqi, Mansoor A. S.
Publicado 2005

Analysis of superfamily specific profile-profile recognition accuracy

por Casbon, James A, Saqi, Mansoor AS
Publicado 2004

A high level interface to SCOP and ASTRAL implemented in Python

por Casbon, James A, Crooks, Gavin E, Saqi, Mansoor AS
Publicado 2006

Spectral clustering of protein sequences

por Paccanaro, Alberto, Casbon, James A., Saqi, Mansoor A. S.
Publicado 2006

Predicting deleterious nsSNPs: an analysis of sequence and structural attributes

por Dobson, Richard J, Munroe, Patricia B, Caulfield, Mark J, Saqi, Mansoor AS
Publicado 2006

Navigating the disease landscape: knowledge representations for contextualizing molecular signatures

por Saqi, Mansoor, Lysenko, Artem, Guo, Yi-Ke, Tsunoda, Tatsuhiko, Auffray, Charles
Publicado 2018

Discovering Study-Specific Gene Regulatory Networks

por Bo, Valeria, Curtis, Tanya, Lysenko, Artem, Saqi, Mansoor, Swift, Stephen, Tucker, Allan
Publicado 2014

Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks

por Balaur, Irina, Mazein, Alexander, Saqi, Mansoor, Lysenko, Artem, Rawlings, Christopher J, Auffray, Charles
Publicado 2017

Representing and querying disease networks using graph databases

por Lysenko, Artem, Roznovăţ, Irina A., Saqi, Mansoor, Mazein, Alexander, Rawlings, Christopher J, Auffray, Charles
Publicado 2016

STON: exploring biological pathways using the SBGN standard and graph databases

por Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Publicado 2016

Clustering of Pseudomonas aeruginosa transcriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles

por Waite, Richard D, Paccanaro, Alberto, Papakonstantinopoulou, Anastasia, Hurst, Jacob M, Saqi, Mansoor, Littler, Eddie, Curtis, Michael A
Publicado 2006

Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis

por Lysenko, Artem, Defoin-Platel, Michael, Hassani-Pak, Keywan, Taubert, Jan, Hodgman, Charlie, Rawlings, Christopher J, Saqi, Mansoor
Publicado 2011

AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations

por Defoin-Platel, Michael, Hindle, Matthew M, Lysenko, Artem, Powers, Stephen J, Habash, Dimah Z, Rawlings, Christopher J, Saqi, Mansoor
Publicado 2011

Network-Based Data Integration for Selecting Candidate Virulence Associated Proteins in the Cereal Infecting Fungus Fusarium graminearum

por Lysenko, Artem, Urban, Martin, Bennett, Laura, Tsoka, Sophia, Janowska-Sejda, Elzbieta, Rawlings, Chris J., Hammond-Kosack, Kim E., Saqi, Mansoor
Publicado 2013

Parsing brain-behavior heterogeneity in very preterm born children using integrated similarity networks

por Hadaya, Laila, Dimitrakopoulou, Konstantina, Vanes, Lucy D., Kanel, Dana, Fenn-Moltu, Sunniva, Gale-Grant, Oliver, Counsell, Serena J., Edwards, A. David, Saqi, Mansoor, Batalle, Dafnis, Nosarti, Chiara
Publicado 2023

PlatformTM, a standards-based data custodianship platform for translational medicine research

por Emam, Ibrahim, Elyasigomari, Vahid, Matthews, Alex, Pavlidis, Stelios, Rocca-Serra, Philippe, Guitton, Florian, Verbeeck, Denny, Grainger, Lucinda, Borgogni, Erica, Del Giudice, Giuseppe, Saqi, Mansoor, Houston, Paul, Guo, Yike
Publicado 2019

Neutrophils Dominate the Cervical Immune Cell Population in Pregnancy and Their Transcriptome Correlates With the Microbial Vaginal Environment

por Mohd Zaki, Amirah, Hadingham, Alicia, Flaviani, Flavia, Haque, Yasmin, Mi, Jia Dai, Finucane, Debbie, Dalla Valle, Giorgia, Mason, A. James, Saqi, Mansoor, Gibbons, Deena L., Tribe, Rachel M.
Publicado 2022

Systems Responses to Progressive Water Stress in Durum Wheat

por Habash, Dimah Z., Baudo, Marcela, Hindle, Matthew, Powers, Stephen J., Defoin-Platel, Michael, Mitchell, Rowan, Saqi, Mansoor, Rawlings, Chris, Latiri, Kawther, Araus, Jose L., Abdulkader, Ahmad, Tuberosa, Roberto, Lawlor, David W., Nachit, Miloudi M.
Publicado 2014

Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms

por Mazein, Alexander, Ostaszewski, Marek, Kuperstein, Inna, Watterson, Steven, Le Novère, Nicolas, Lefaudeux, Diane, De Meulder, Bertrand, Pellet, Johann, Balaur, Irina, Saqi, Mansoor, Nogueira, Maria Manuela, He, Feng, Parton, Andrew, Lemonnier, Nathanaël, Gawron, Piotr, Gebel, Stephan, Hainaut, Pierre, Ollert, Markus, Dogrusoz, Ugur, Barillot, Emmanuel, Zinovyev, Andrei, Schneider, Reinhard, Balling, Rudi, Auffray, Charles
Publicado 2018