Genomic tracing of epidemics and disease outbreaks

por Schürch, Anita C., Siezen, Roland J.
Publicado 2010

On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data

por Arredondo-Alonso, Sergio, Willems, Rob J., van Schaik, Willem, Schürch, Anita C.
Publicado 2017

Mode and dynamics of vanA-type vancomycin resistance dissemination in Dutch hospitals

por Arredondo-Alonso, Sergio, Top, Janetta, Corander, Jukka, Willems, Rob J. L., Schürch, Anita C.
Publicado 2021

Novel Divergent Rhabdovirus in Feces of Red Fox, Spain

por Bodewes, Rogier, Ruiz-Gonzalez, Aritz, Schürch, Anita C., Osterhaus, Albert D.M.E., Smits, Saskia L.
Publicado 2014

Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data

por Paganini, Julian A., Plantinga, Nienke L., Arredondo-Alonso, Sergio, Willems, Rob J. L., Schürch, Anita C.
Publicado 2021

gplas: a comprehensive tool for plasmid analysis using short-read graphs

por Arredondo-Alonso, Sergio, Bootsma, Martin, Hein, Yaïr, Rogers, Malbert R C, Corander, Jukka, Willems, Rob J L, Schürch, Anita C
Publicado 2020

Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen, Enterococcus faecium

por Top, Janetta, Arredondo-Alonso, Sergio, Schürch, Anita C., Puranen, Santeri, Pesonen, Maiju, Pensar, Johan, Willems, Rob J. L., Corander, Jukka
Publicado 2020

Assembly of viral genomes from metagenomes

por Smits, Saskia L., Bodewes, Rogier, Ruiz-Gonzalez, Aritz, Baumgärtner, Wolfgang, Koopmans, Marion P., Osterhaus, Albert D. M. E., Schürch, Anita C.
Publicado 2014

Recovering full-length viral genomes from metagenomes

por Smits, Saskia L., Bodewes, Rogier, Ruiz-González, Aritz, Baumgärtner, Wolfgang, Koopmans, Marion P., Osterhaus, Albert D. M. E., Schürch, Anita C.
Publicado 2015

Draft Genome Sequence of Haemophilus haemolyticus Strain 16/010 O, Isolated from a Sputum Sample from a Cystic Fibrosis Patient

por Fluit, Ad C., Bayjanov, Jumamurat R., Tunney, Michael, Elborn, J. Stuart, Rogers, Malbert R. C., Schürch, Anita C., Ekkelenkamp, Miquel B.
Publicado 2019

A high-throughput multiplexing and selection strategy to complete bacterial genomes

por Arredondo-Alonso, Sergio, Pöntinen, Anna K, Cléon, François, Gladstone, Rebecca A, Schürch, Anita C, Johnsen, Pål J, Samuelsen, Ørjan, Corander, Jukka
Publicado 2021

Picobirnaviruses in the Human Respiratory Tract

por Smits, Saskia L., van Leeuwen, Marije, Schapendonk, Claudia M.E., Schürch, Anita C., Bodewes, Rogier, Haagmans, Bart L., Osterhaus, Albert D.M.E.
Publicado 2012

mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species

por Arredondo-Alonso, Sergio, Rogers, Malbert R. C., Braat, Johanna C., Verschuuren, Tess D., Top, Janetta, Corander, Jukka, Willems, Rob J. L., Schürch, Anita C.
Publicado 2018

Corrigendum: mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species

por Arredondo-Alonso, Sergio, Rogers, Malbert R. C., Braat, Johanna C., Verschuuren, Tess D., Top, Janetta, Corander, Jukka, Willems, Rob J. L., Schürch, Anita C.
Publicado 2019

Comparative Analysis of Mycobacterium tuberculosis pe and ppe Genes Reveals High Sequence Variation and an Apparent Absence of Selective Constraints

por McEvoy, Christopher R. E., Cloete, Ruben, Müller, Borna, Schürch, Anita C., van Helden, Paul D., Gagneux, Sebastien, Warren, Robin M., Gey van Pittius, Nicolaas C.
Publicado 2012

Novel Cyclovirus in Human Cerebrospinal Fluid, Malawi, 2010–2011

por Smits, Saskia L., Zijlstra, Ed E, van Hellemond, Jaap J., Schapendonk, Claudia M.E., Bodewes, Rogier, Schürch, Anita C., Haagmans, Bart L., Osterhaus, Albert D.M.E.
Publicado 2013

Genetic Relatedness of Dolphin Rhabdovirus with Fish Rhabdoviruses

por Siegers, Jurre Y., van de Bildt, Marco W.G., van Elk, Cornelis E., Schürch, Anita C., Tordo, Noël, Kuiken, Thijs, Bodewes, Rogier, Osterhaus, Albert D.M.E.
Publicado 2014

Virus characterization and discovery in formalin-fixed paraffin-embedded tissues

por Bodewes, Rogier, van Run, Peter R.W.A., Schürch, Anita C., Koopmans, Marion P.G., Osterhaus, Albert D.M.E., Baumgärtner, Wolfgang, Kuiken, Thijs, Smits, Saskia L.
Publicado 2015

Mge-cluster: a reference-free approach for typing bacterial plasmids

por Arredondo-Alonso, Sergio, Gladstone, Rebecca A, Pöntinen, Anna K, Gama, João A, Schürch, Anita C, Lanza, Val F, Johnsen, Pål Jarle, Samuelsen, Ørjan, Tonkin-Hill, Gerry, Corander, Jukka
Publicado 2023

Prevalence, risk factors and genetic characterisation of extended-spectrum beta-lactamase and carbapenemase-producing Enterobacteriaceae (ESBL-E and CPE): a community-based cross-s...

por van den Bunt, Gerrita, van Pelt, Wilfrid, Hidalgo, Laura, Scharringa, Jelle, de Greeff, Sabine C., Schürch, Anita C., Mughini-Gras, Lapo, Bonten, Marc J.M., Fluit, Ad C.
Publicado 2019