FAIR data station for lightweight metadata management and validation of omics studies

por Nijsse, Bart, Schaap, Peter J, Koehorst, Jasper J
Publicado 2023

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

por Braaksma, Machtelt, Martens-Uzunova, Elena S, Punt, Peter J, Schaap, Peter J
Publicado 2010

Overexpression of the Aspergillus niger GatA transporter leads to preferential use of D-galacturonic acid over D-xylose

por Sloothaak, Jasper, Schilders, Mike, Schaap, Peter J, de Graaff, Leo H
Publicado 2014

Forward Genetics by Genome Sequencing Uncovers the Central Role of the Aspergillus niger goxB Locus in Hydrogen Peroxide Induced Glucose Oxidase Expression

por Laothanachareon, Thanaporn, Tamayo-Ramos, Juan Antonio, Nijsse, Bart, Schaap, Peter J.
Publicado 2018

Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains

por te Molder, Dennie, Poncheewin, Wasin, Schaap, Peter J., Koehorst, Jasper J.
Publicado 2021

Studying microbial functionality within the gut ecosystem by systems biology

por Hornung, Bastian, Martins dos Santos, Vitor A. P., Smidt, Hauke, Schaap, Peter J.
Publicado 2018

Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis

por van Dam, Jesse CJ, Schaap, Peter J, Martins dos Santos, Vitor AP, Suárez-Diez, María
Publicado 2014

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

por Davids, Mark, Hugenholtz, Floor, Martins dos Santos, Vitor, Smidt, Hauke, Kleerebezem, Michiel, Schaap, Peter J.
Publicado 2016

Modeling the Metabolic State of Mycobacterium tuberculosis Upon Infection

por Rienksma, Rienk A., Schaap, Peter J., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Publicado 2018

Modeling Host-Pathogen Interaction to Elucidate the Metabolic Drug Response of Intracellular Mycobacterium tuberculosis

por Rienksma, Rienk A., Schaap, Peter J., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Publicado 2019

Toxicological response of the model fungus Saccharomyces cerevisiae to different concentrations of commercial graphene nanoplatelets

por Suarez-Diez, Maria, Porras, Santiago, Laguna-Teno, Felix, Schaap, Peter J., Tamayo-Ramos, Juan A.
Publicado 2020

Combined Transcriptome Sequencing of Mycoplasma hyopneumoniae and Infected Pig Lung Tissue Reveals Up-Regulation of Bacterial F1-Like ATPase and Down-Regulation of the P102 Cilium...

por Kamminga, Tjerko, Benis, Nirupama, Martins dos Santos, Vitor, Bijlsma, Jetta J. E., Schaap, Peter J.
Publicado 2020

Effects of Argonaute on Gene Expression in Thermus thermophilus

por Swarts, Daan C., Koehorst, Jasper J., Westra, Edze R., Schaap, Peter J., van der Oost, John
Publicado 2015

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

por Saccenti, Edoardo, Nieuwenhuijse, David, Koehorst, Jasper J., Martins dos Santos, Vitor A. P., Schaap, Peter J.
Publicado 2015

Genome-scale metabolic modeling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production

por Pham, Nhung, Reijnders, Maarten, Suarez-Diez, Maria, Nijsse, Bart, Springer, Jan, Eggink, Gerrit, Schaap, Peter J.
Publicado 2021

A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia

por Scott, William T., Benito-Vaquerizo, Sara, Zimmermann, Johannes, Bajić, Djordje, Heinken, Almut, Suarez-Diez, Maria, Schaap, Peter J.
Publicado 2023

Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S

por Goris, Tobias, Hornung, Bastian, Kruse, Thomas, Reinhold, Anika, Westermann, Martin, Schaap, Peter J, Smidt, Hauke, Diekert, Gabriele
Publicado 2015

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics

por Koehorst, Jasper J., Saccenti, Edoardo, Schaap, Peter J., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Publicado 2017

Proteomic Analysis of the Secretory Response of Aspergillus niger to D-Maltose and D-Xylose

por Ferreira de Oliveira, José Miguel P., van Passel, Mark W. J., Schaap, Peter J., de Graaff, Leo H.
Publicado 2011

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

por van Dam, Jesse CJ, Koehorst, Jasper J, Schaap, Peter J, Martins dos Santos, Vitor AP, Suarez-Diez, Maria
Publicado 2015