Energy landscape underlying spontaneous insertion and folding of an alpha-helical transmembrane protein into a bilayer

por Lu, Wei, Schafer, Nicholas P., Wolynes, Peter G.
Publicado 2018

A generalized Flory-Stockmayer kinetic theory of connectivity percolation and rigidity percolation of cytoskeletal networks

por Bueno, Carlos, Liman, James, Schafer, Nicholas P., Cheung, Margaret S., Wolynes, Peter G.
Publicado 2022

A structural dynamics model for how CPEB3 binding to SUMO2 can regulate translational control in dendritic spines

por Gu, Xinyu, Schafer, Nicholas P., Bueno, Carlos, Lu, Wei, Wolynes, Peter G.
Publicado 2022

Discrete Kinetic Models from Funneled Energy Landscape Simulations

por Schafer, Nicholas P., Hoffman, Ryan M. B., Burger, Anat, Craig, Patricio O., Komives, Elizabeth A., Wolynes, Peter G.
Publicado 2012

Correction: Discrete Kinetic Models from Funneled Energy Landscape Simulations

por Schafer, Nicholas P., Hoffman, Ryan M. B., Burger, Anat, Craig, Patricio O., Komives, Elizabeth A., Wolynes, Peter G.
Publicado 2013

Surveying biomolecular frustration at atomic resolution

por Chen, Mingchen, Chen, Xun, Schafer, Nicholas P., Clementi, Cecilia, Komives, Elizabeth A., Ferreiro, Diego U., Wolynes, Peter G.
Publicado 2020

The transcriptional regulator GalR self-assembles to form highly regular tubular structures

por Agerschou, Emil D., Christiansen, Gunna, Schafer, Nicholas P., Madsen, Daniel Jhaf, Brodersen, Ditlev E., Semsey, Szabolcs, Otzen, Daniel E.
Publicado 2016

Molecular-replacement phasing using predicted protein structures from AWSEM-Suite

por Jin, Shikai, Miller, Mitchell D., Chen, Mingchen, Schafer, Nicholas P., Lin, Xingcheng, Chen, Xun, Phillips, George N., Wolynes, Peter G.
Publicado 2020

Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics

por Parra, R. Gonzalo, Schafer, Nicholas P., Radusky, Leandro G., Tsai, Min-Yeh, Guzovsky, A. Brenda, Wolynes, Peter G., Ferreiro, Diego U.
Publicado 2016

Assemblies of calcium/calmodulin-dependent kinase II with actin and their dynamic regulation by calmodulin in dendritic spines

por Wang, Qian, Chen, Mingchen, Schafer, Nicholas P., Bueno, Carlos, Song, Sarah S., Hudmon, Andy, Wolynes, Peter G., Waxham, M. Neal, Cheung, Margaret S.
Publicado 2019

OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations

por Lu, Wei, Bueno, Carlos, Schafer, Nicholas P., Moller, Joshua, Jin, Shikai, Chen, Xun, Chen, Mingchen, Gu, Xinyu, Davtyan, Aram, de Pablo, Juan J., Wolynes, Peter G.
Publicado 2021

Biophysical characterization and modeling of human Ecdysoneless (ECD) protein supports a scaffolding function

por Mir, Riyaz A., Lovelace, Jeff, Schafer, Nicholas P., Simone, Peter D., Kellezi, Admir, Kolar, Carol, Spagnol, Gaelle, Sorgen, Paul L., Band, Hamid, Band, Vimla, Borgstahl, Gloria E. O.
Publicado 2016

AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes

por Jin, Shikai, Contessoto, Vinicius G, Chen, Mingchen, Schafer, Nicholas P, Lu, Wei, Chen, Xun, Bueno, Carlos, Hajitaheri, Arya, Sirovetz, Brian J, Davtyan, Aram, Papoian, Garegin A, Tsai, Min-Yeh, Wolynes, Peter G
Publicado 2020

Mass Spectrometry of RNA-Binding Proteins during Liquid–Liquid Phase Separation Reveals Distinct Assembly Mechanisms and Droplet Architectures

por Sahin, Cagla, Motso, Aikaterini, Gu, Xinyu, Feyrer, Hannes, Lama, Dilraj, Arndt, Tina, Rising, Anna, Gese, Genis Valentin, Hällberg, B. Martin, Marklund, Erik. G., Schafer, Nicholas P., Petzold, Katja, Teilum, Kaare, Wolynes, Peter G., Landreh, Michael
Publicado 2023

Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level

por Lin, Xingcheng, Kulkarni, Prakash, Bocci, Federico, Schafer, Nicholas P., Roy, Susmita, Tsai, Min-Yeh, He, Yanan, Chen, Yihong, Rajagopalan, Krithika, Mooney, Steven M., Zeng, Yu, Weninger, Keith, Grishaev, Alex, Onuchic, José N., Levine, Herbert, Wolynes, Peter G., Salgia, Ravi, Rangarajan, Govindan, Uversky, Vladimir, Orban, John, Jolly, Mohit Kumar
Publicado 2019