A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

por Scharm, Martin, Waltemath, Dagmar
Publicado 2016

An algorithm to detect and communicate the differences in computational models describing biological systems

por Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
Publicado 2016

The Cardiac Electrophysiology Web Lab

por Cooper, Jonathan, Scharm, Martin, Mirams, Gary R.
Publicado 2016

COMODI: an ontology to characterise differences in versions of computational models in biology

por Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
Publicado 2016

Metabolic function-based normalization improves transcriptome data-driven reduction of genome-scale metabolic models

por Jalili, Mahdi, Scharm, Martin, Wolkenhauer, Olaf, Salehzadeh-Yazdi, Ali
Publicado 2023

Exploring the evolution of biochemical models at the network level

por Gebhardt, Tom, Touré, Vasundra, Waltemath, Dagmar, Wolkenhauer, Olaf, Scharm, Martin
Publicado 2022

Exploring the Metabolic Heterogeneity of Cancers: A Benchmark Study of Context-Specific Models

por Jalili, Mahdi, Scharm, Martin, Wolkenhauer, Olaf, Damaghi, Mehdi, Salehzadeh-Yazdi, Ali
Publicado 2021

Evolution of computational models in BioModels Database and the Physiome Model Repository

por Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
Publicado 2018

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

por Bergmann, Frank T, Adams, Richard, Moodie, Stuart, Cooper, Jonathan, Glont, Mihai, Golebiewski, Martin, Hucka, Michael, Laibe, Camille, Miller, Andrew K, Nickerson, David P, Olivier, Brett G, Rodriguez, Nicolas, Sauro, Herbert M, Scharm, Martin, Soiland-Reyes, Stian, Waltemath, Dagmar, Yvon, Florent, Le Novère, Nicolas
Publicado 2014

Harmonizing semantic annotations for computational models in biology

por Neal, Maxwell Lewis, König, Matthias, Nickerson, David, Mısırlı, Göksel, Kalbasi, Reza, Dräger, Andreas, Atalag, Koray, Chelliah, Vijayalakshmi, Cooling, Michael T, Cook, Daniel L, Crook, Sharon, de Alba, Miguel, Friedman, Samuel H, Garny, Alan, Gennari, John H, Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Myers, Chris, Olivier, Brett G, Sauro, Herbert M, Scharm, Martin, Snoep, Jacky L, Touré, Vasundra, Wipat, Anil, Wolkenhauer, Olaf, Waltemath, Dagmar
Publicado 2018

Toward community standards and software for whole-cell modeling

por Waltemath, Dagmar, Karr, Jonathan R., Bergmann, Frank T., Chelliah, Vijayalakshmi, Hucka, Michael, Krantz, Marcus, Liebermeister, Wolfram, Mendes, Pedro, Myers, Chris J., Pir, Pinar, Alaybeyoglu, Begum, Aranganathan, Naveen K, Baghalian, Kambiz, Bittig, Arne T., Pinto Burke, Paulo E., Cantarelli, Matteo, Chew, Yin Hoon, Costa, Rafael S., Cursons, Joseph, Czauderna, Tobias, Goldberg, Arthur P., Gómez, Harold F., Hahn, Jens, Hameri, Tuure, Hernandez Gardiol, Daniel F., Kazakiewicz, Denis, Kiselev, Ilya, Knight-Schrijver, Vincent, Knüpfer, Christian, König, Matthias, Lee, Daewon, Lloret-Villas, Audald, Mandrik, Nikita, Medley, J. Kyle, Moreau, Bertrand, Naderi-Meshkin, Hojjat, Palaniappan, Sucheendra K., Priego-Espinosa, Daniel, Scharm, Martin, Sharma, Mahesh, Smallbone, Kieran, Stanford, Natalie J., Song, Je-Hoon, Theile, Tom, Tokic, Milenko, Tomar, Namrata, Touré, Vasundra, Uhlendorf, Jannis, Varusai, Thawfeek M, Watanabe, Leandro H., Wendland, Florian, Wolfien, Markus, Yurkovich, James T., Zhu, Yan, Zardilis, Argyris, Zhukova, Anna, Schreiber, Falk
Publicado 2016