Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary

por Brynildsrud, Ola, Bohlin, Jon, Scheffer, Lonneke, Eldholm, Vegard
Publicado 2016

Erratum to: Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary

por Brynildsrud, Ola, Bohlin, Jon, Scheffer, Lonneke, Eldholm, Vegard
Publicado 2016

CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching

por Rognes, Torbjørn, Scheffer, Lonneke, Greiff, Victor, Sandve, Geir Kjetil
Publicado 2022

Draft Genome Sequence of a Potentially Novel Streptococcus Species Belonging to the Streptococcus mitis Group

por Kirkeleite, Ingerid Ø., Bohlin, Jon, Scheffer, Lonneke, Weme, Einar T., Vestrheim, Didrik F.
Publicado 2018

Ten simple rules for quick and dirty scientific programming

por Balaban, Gabriel, Grytten, Ivar, Rand, Knut Dagestad, Scheffer, Lonneke, Sandve, Geir Kjetil
Publicado 2021

Whole-genome sequencing and antimicrobial resistance in Brucella melitensis from a Norwegian perspective

por Johansen, Tone B., Scheffer, Lonneke, Jensen, Veronica K., Bohlin, Jon, Feruglio, Siri L.
Publicado 2018

Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification

por Kanduri, Chakravarthi, Pavlović, Milena, Scheffer, Lonneke, Motwani, Keshav, Chernigovskaya, Maria, Greiff, Victor, Sandve, Geir K
Publicado 2022

simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods

por Kanduri, Chakravarthi, Scheffer, Lonneke, Pavlović, Milena, Rand, Knut Dagestad, Chernigovskaya, Maria, Pirvandy, Oz, Yaari, Gur, Greiff, Victor, Sandve, Geir K
Publicado 2023

TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences

por Dahal-Koirala, Shiva, Balaban, Gabriel, Neumann, Ralf Stefan, Scheffer, Lonneke, Lundin, Knut Erik Aslaksen, Greiff, Victor, Sollid, Ludvig Magne, Qiao, Shuo-Wang, Sandve, Geir Kjetil
Publicado 2022

Individualized VDJ recombination predisposes the available Ig sequence space

por Slabodkin, Andrei, Chernigovskaya, Maria, Mikocziova, Ivana, Akbar, Rahmad, Scheffer, Lonneke, Pavlović, Milena, Bashour, Habib, Snapkov, Igor, Mehta, Brij Bhushan, Weber, Cédric R., Gutierrez-Marcos, Jose, Sollid, Ludvig M., Haff, Ingrid Hobæk, Sandve, Geir Kjetil, Robert, Philippe A., Greiff, Victor
Publicado 2021

In silico proof of principle of machine learning-based antibody design at unconstrained scale

por Akbar, Rahmad, Robert, Philippe A., Weber, Cédric R., Widrich, Michael, Frank, Robert, Pavlović, Milena, Scheffer, Lonneke, Chernigovskaya, Maria, Snapkov, Igor, Slabodkin, Andrei, Mehta, Brij Bhushan, Miho, Enkelejda, Lund-Johansen, Fridtjof, Andersen, Jan Terje, Hochreiter, Sepp, Hobæk Haff, Ingrid, Klambauer, Günter, Sandve, Geir Kjetil, Greiff, Victor
Publicado 2022