Complete RNA-seq analysis of cancer transcriptomes from FFPE samples

por Luo, Shujun, Khrebtukova, Irina, Perou, Chuck, Schroth, Gary P
Publicado 2010

Meraculous: De Novo Genome Assembly with Short Paired-End Reads

por Chapman, Jarrod A., Ho, Isaac, Sunkara, Sirisha, Luo, Shujun, Schroth, Gary P., Rokhsar, Daniel S.
Publicado 2011

Comprehensive Analysis of RNA-Protein Interactions by High Throughput Sequencing-RNA Affinity Profiling

por Tome, Jacob M., Ozer, Abdullah, Pagano, John M., Gheba, Dan, Schroth, Gary P., Lis, John T.
Publicado 2014

Targeted Sequencing of Respiratory Viruses in Clinical Specimens for Pathogen Identification and Genome-Wide Analysis

por Yang, Yu, Walls, Shannon D., Gross, Stephen M., Schroth, Gary P., Jarman, Richard G., Hang, Jun
Publicado 2018

MetMap Enables Genome-Scale Methyltyping for Determining Methylation States in Populations

por Singer, Meromit, Boffelli, Dario, Dhahbi, Joseph, Schönhuth, Alexander, Schroth, Gary P., Martin, David I. K., Pachter, Lior
Publicado 2010

Noncanonical Compensation of Zygotic X Transcription in Early Drosophila melanogaster Development Revealed through Single-Embryo RNA-Seq

por Lott, Susan E., Villalta, Jacqueline E., Schroth, Gary P., Luo, Shujun, Tonkin, Leath A., Eisen, Michael B.
Publicado 2011

Single-neuron RNA-Seq: technical feasibility and reproducibility

por Qiu, Shenfeng, Luo, Shujun, Evgrafov, Oleg, Li, Robin, Schroth, Gary P., Levitt, Pat, Knowles, James A., Wang, Kai
Publicado 2012

Erratum: Single-neuron RNA-Seq: technical feasibility and reproducibility

por Qiu, Shenfeng, Luo, Shujun, Evgrafov, Oleg, Li, Robin, Schroth, Gary P., Levitt, Pat, Knowles, James A., Wang, Kai
Publicado 2013

Dedifferentiation and neuronal repression define familial Alzheimer’s disease

por Caldwell, Andrew B., Liu, Qing, Schroth, Gary P., Galasko, Douglas R., Yuan, Shauna H., Wagner, Steven L., Subramaniam, Shankar
Publicado 2020

From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing

por Marinov, Georgi K., Williams, Brian A., McCue, Ken, Schroth, Gary P., Gertz, Jason, Myers, Richard M., Wold, Barbara J.
Publicado 2014

Alternative Isoform Regulation in Human Tissue Transcriptomes

por Wang, Eric T., Sandberg, Rickard, Luo, Shujun, Khrebtukova, Irina, Zhang, Lu, Mayr, Christine, Kingsmore, Stephen F., Schroth, Gary P., Burge, Christopher B.
Publicado 2008

Complete Genome Sequence of a Novel Human WU Polyomavirus Isolate Associated with Acute Respiratory Infection

por Dinwiddie, Darrell L., Dehority, Walter N., Schwalm, Kurt C., Young, Jesse M., Gross, Stephen M., Schroth, Gary P., Young, Stephen A.
Publicado 2016

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq

por Yi, Hana, Cho, Yong-Joon, Won, Sungho, Lee, Jong-Eun, Jin Yu, Hyung, Kim, Sujin, Schroth, Gary P., Luo, Shujun, Chun, Jongsik
Publicado 2011

Diametrically opposite methylome-transcriptome relationships in high- and low-CpG promoter genes in postmitotic neural rat tissue

por Hartung, Theresa, Zhang, Lu, Kanwar, Rahul, Khrebtukova, Irina, Reinhardt, Matthias, Wang, Cheng, Therneau, Terry M., Banck, Michaela S., Schroth, Gary P., Beutler, Andreas S.
Publicado 2012

Transcriptome Sequencing, Microarray, and Proteomic Analyses Reveal Cellular and Metabolic Impact of Hepatitis C Virus Infection In Vitro

por Woodhouse, Stephen D, Narayan, Ramamurthy, Latham, Sally, Lee, Sheena, Antrobus, Robin, Gangadharan, Bevin, Luo, Shujun, Schroth, Gary P, Klenerman, Paul, Zitzmann, Nicole
Publicado 2010

High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing

por Matsumura, Hideo, Yoshida, Kentaro, Luo, Shujun, Kimura, Eiji, Fujibe, Takahiro, Albertyn, Zayed, Barrero, Roberto A., Krüger, Detlev H., Kahl, Günter, Schroth, Gary P., Terauchi, Ryohei
Publicado 2010

Cohesin-mediated interactions organize chromosomal domain architecture

por Sofueva, Sevil, Yaffe, Eitan, Chan, Wen-Ching, Georgopoulou, Dimitra, Vietri Rudan, Matteo, Mira-Bontenbal, Hegias, Pollard, Steven M, Schroth, Gary P, Tanay, Amos, Hadjur, Suzana
Publicado 2013

Comprehensive viral enrichment enables sensitive respiratory virus genomic identification and analysis by next generation sequencing

por O'Flaherty, Brigid M., Li, Yan, Tao, Ying, Paden, Clinton R., Queen, Krista, Zhang, Jing, Dinwiddie, Darrell L., Gross, Stephen M., Schroth, Gary P., Tong, Suxiang
Publicado 2018

Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls

por Hulstaert, Eva, Decock, Anneleen, Morlion, Annelien, Everaert, Celine, Verniers, Kimberly, Nuytens, Justine, Nijs, Nele, Schroth, Gary P., Kuersten, Scott, Gross, Stephen M., Mestdagh, Pieter, Vandesompele, Jo
Publicado 2021

Assessment and improvement of Indian‐origin rhesus macaque and Mauritian‐origin cynomolgus macaque genome annotations using deep transcriptome sequencing data

por Peng, Xinxia, Pipes, Lenore, Xiong, Hao, Green, Richard R., Jones, Daniel C., Ruzzo, Walter L., Schroth, Gary P., Mason, Christopher E., Palermo, Robert E., Katze, Michael G.
Publicado 2014