Designing string-of-beads vaccines with optimal spacers

por Schubert, Benjamin, Kohlbacher, Oliver
Publicado 2016

Graph-theoretical formulation of the generalized epitope-based vaccine design problem

por Dorigatti, Emilio, Schubert, Benjamin
Publicado 2020

Joint epitope selection and spacer design for string-of-beads vaccines

por Dorigatti, Emilio, Schubert, Benjamin
Publicado 2020

Antigen-Specific Treg Therapy in Type 1 Diabetes – Challenges and Opportunities

por Serr, Isabelle, Drost, Felix, Schubert, Benjamin, Daniel, Carolin
Publicado 2021

EpiToolKit—a web-based workbench for vaccine design

por Schubert, Benjamin, Brachvogel, Hans-Philipp, Jürges, Christopher, Kohlbacher, Oliver
Publicado 2015

Predicting antigen specificity of single T cells based on TCR CDR3 regions

por Fischer, David S, Wu, Yihan, Schubert, Benjamin, Theis, Fabian J
Publicado 2020

OptiType: precision HLA typing from next-generation sequencing data

por Szolek, András, Schubert, Benjamin, Mohr, Christopher, Sturm, Marc, Feldhahn, Magdalena, Kohlbacher, Oliver
Publicado 2014

ImmunoNodes – graphical development of complex immunoinformatics workflows

por Schubert, Benjamin, de la Garza, Luis, Mohr, Christopher, Walzer, Mathias, Kohlbacher, Oliver
Publicado 2017

Population-specific design of de-immunized protein biotherapeutics

por Schubert, Benjamin, Schärfe, Charlotta, Dönnes, Pierre, Hopf, Thomas, Marks, Debora, Kohlbacher, Oliver
Publicado 2018

FRED 2: an immunoinformatics framework for Python

por Schubert, Benjamin, Walzer, Mathias, Brachvogel, Hans-Philipp, Szolek, András, Mohr, Christopher, Kohlbacher, Oliver
Publicado 2016

Multi-omics regulatory network inference in the presence of missing data

por Henao, Juan D, Lauber, Michael, Azevedo, Manuel, Grekova, Anastasiia, Theis, Fabian, List, Markus, Ogris, Christoph, Schubert, Benjamin
Publicado 2023

An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides

por Domingo-Calap, Pilar, Schubert, Benjamin, Joly, Mélanie, Solis, Morgane, Untrau, Meiggie, Carapito, Raphael, Georgel, Philippe, Caillard, Sophie, Fafi-Kremer, Samira, Paul, Nicodème, Kohlbacher, Oliver, González-Candelas, Fernando, Bahram, Seiamak
Publicado 2018

ClinOmicsTrail(bc): a visual analytics tool for breast cancer treatment stratification

por Schneider, Lara, Kehl, Tim, Thedinga, Kristina, Grammes, Nadja Liddy, Backes, Christina, Mohr, Christopher, Schubert, Benjamin, Lenhof, Kerstin, Gerstner, Nico, Hartkopf, Andreas Daniel, Wallwiener, Markus, Kohlbacher, Oliver, Keller, Andreas, Meese, Eckart, Graf, Norbert, Lenhof, Hans-Peter
Publicado 2019

The EVcouplings Python framework for coevolutionary sequence analysis

por Hopf, Thomas A, Green, Anna G, Schubert, Benjamin, Mersmann, Sophia, Schärfe, Charlotta P I, Ingraham, John B, Toth-Petroczy, Agnes, Brock, Kelly, Riesselman, Adam J, Palmedo, Perry, Kang, Chan, Sheridan, Robert, Draizen, Eli J, Dallago, Christian, Sander, Chris, Marks, Debora S
Publicado 2019

Proteomics reveals antiviral host response and NETosis during acute COVID-19 in high-risk patients

por Bauer, Alina, Pachl, Elisabeth, Hellmuth, Johannes C., Kneidinger, Nikolaus, Heydarian, Motaharehsadat, Frankenberger, Marion, Stubbe, Hans C., Ryffel, Bernhard, Petrera, Agnese, Hauck, Stefanie M., Behr, Jürgen, Kaiser, Rainer, Scherer, Clemens, Deng, Li, Teupser, Daniel, Ahmidi, Narges, Muenchhoff, Maximilian, Schubert, Benjamin, Hilgendorff, Anne
Publicado 2023

Impaired function and delayed regeneration of dendritic cells in COVID-19

por Winheim, Elena, Rinke, Linus, Lutz, Konstantin, Reischer, Anna, Leutbecher, Alexandra, Wolfram, Lina, Rausch, Lisa, Kranich, Jan, Wratil, Paul R., Huber, Johanna E., Baumjohann, Dirk, Rothenfusser, Simon, Schubert, Benjamin, Hilgendorff, Anne, Hellmuth, Johannes C., Scherer, Clemens, Muenchhoff, Maximilian, von Bergwelt-Baildon, Michael, Stark, Konstantin, Straub, Tobias, Brocker, Thomas, Keppler, Oliver T., Subklewe, Marion, Krug, Anne B.
Publicado 2021

Self-sustaining IL-8 loops drive a prothrombotic neutrophil phenotype in severe COVID-19

por Kaiser, Rainer, Leunig, Alexander, Pekayvaz, Kami, Popp, Oliver, Joppich, Markus, Polewka, Vivien, Escaig, Raphael, Anjum, Afra, Hoffknecht, Marie-Louise, Gold, Christoph, Brambs, Sophia, Engel, Anouk, Stockhausen, Sven, Knottenberg, Viktoria, Titova, Anna, Haji, Mohamed, Scherer, Clemens, Muenchhoff, Maximilian, Hellmuth, Johannes C., Saar, Kathrin, Schubert, Benjamin, Hilgendorff, Anne, Schulz, Christian, Kääb, Stefan, Zimmer, Ralf, Hübner, Norbert, Massberg, Steffen, Mertins, Philipp, Nicolai, Leo, Stark, Konstantin
Publicado 2021

Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’

por Fischer, David S., Ansari, Meshal, Wagner, Karolin I., Jarosch, Sebastian, Huang, Yiqi, Mayr, Christoph H., Strunz, Maximilian, Lang, Niklas J., D’Ippolito, Elvira, Hammel, Monika, Mateyka, Laura, Weber, Simone, Wolff, Lisa S., Witter, Klaus, Fernandez, Isis E., Leuschner, Gabriela, Milger, Katrin, Frankenberger, Marion, Nowak, Lorenz, Heinig-Menhard, Katharina, Koch, Ina, Stoleriu, Mircea G., Hilgendorff, Anne, Behr, Jürgen, Pichlmair, Andreas, Schubert, Benjamin, Theis, Fabian J., Busch, Dirk H., Schiller, Herbert B., Schober, Kilian
Publicado 2021