Off-season circulation and characterization of enterovirus D68 with respiratory and neurological presentation using whole-genome sequencing

por Cassidy, Hayley, Lizarazo-Forero, Erley, Schuele, Leonard, Van Leer-Buter, Coretta, Niesters, Hubert G. M.
Publicado 2023

Host DNA depletion can increase the sensitivity of Mycobacterium spp. detection through shotgun metagenomics in sputum

por Kok, Nienke A., Peker, Nilay, Schuele, Leonard, de Beer, Jessica L., Rossen, John W. A., Sinha, Bhanu, Couto, Natacha
Publicado 2022

Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudom...

por Peter, Silke, Oberhettinger, Philipp, Schuele, Leonard, Dinkelacker, Ariane, Vogel, Wichard, Dörfel, Daniela, Bezdan, Daniela, Ossowski, Stephan, Marschal, Matthias, Liese, Jan, Willmann, Matthias
Publicado 2017

Exploring a prolonged enterovirus C104 infection in a severely ill patient using nanopore sequencing

por Cassidy, Hayley, Schuele, Leonard, Lizarazo-Forero, Erley, Couto, Natacha, Rossen, John W A, Friedrich, Alex W, van Leer-Buter, Coretta, Niesters, Hubert G M
Publicado 2022

Application of shotgun metagenomics sequencing and targeted sequence capture to detect circulating porcine viruses in the Dutch–German border region

por Schuele, Leonard, Lizarazo‐Forero, Erley, Strutzberg‐Minder, Katrin, Schütze, Sabine, Löbert, Sandra, Lambrecht, Claudia, Harlizius, Jürgen, Friedrich, Alex W., Peter, Silke, Rossen, John W. A., Couto, Natacha
Publicado 2021

Detection of a novel mcr-5.4 gene variant in hospital tap water by shotgun metagenomic sequencing

por Fleres, Giuseppe, Couto, Natacha, Schuele, Leonard, Chlebowicz, Monika A, Mendes, Catarina I, van der Sluis, Luc W M, Rossen, John W A, Friedrich, Alex W, García-Cobos, Silvia
Publicado 2019

Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis

por Peker, Nilay, Schuele, Leonard, Kok, Nienke, Terrazos, Miguel, Neuenschwander, Stefan M., de Beer, Jessica, Akkerman, Onno, Peter, Silke, Ramette, Alban, Merker, Matthias, Niemann, Stefan, Couto, Natacha, Sinha, Bhanu, Rossen, John WA
Publicado 2021

First detection of porcine respirovirus 1 in Germany and the Netherlands

por Schuele, Leonard, Lizarazo‐Forero, Erley, Cassidy, Hayley, Strutzberg‐Minder, Katrin, Boehmer, Jan, Schuetze, Sabine, Loebert, Sandra, Lambrecht, Claudia, Harlizius, Juergen, Friedrich, Alex W., Peter, Silke, Rossen, John W. A., Couto, Natacha
Publicado 2021

Assessment of Viral Targeted Sequence Capture Using Nanopore Sequencing Directly from Clinical Samples

por Schuele, Leonard, Cassidy, Hayley, Lizarazo, Erley, Strutzberg-Minder, Katrin, Schuetze, Sabine, Loebert, Sandra, Lambrecht, Claudia, Harlizius, Juergen, Friedrich, Alex W., Peter, Silke, Niesters, Hubert G. M., Rossen, John W. A., Couto, Natacha
Publicado 2020

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

por Couto, Natacha, Schuele, Leonard, Raangs, Erwin C., Machado, Miguel P., Mendes, Catarina I., Jesus, Tiago F., Chlebowicz, Monika, Rosema, Sigrid, Ramirez, Mário, Carriço, João A., Autenrieth, Ingo B., Friedrich, Alex W., Peter, Silke, Rossen, John W.
Publicado 2018

Author Correction: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

por Couto, Natacha, Schuele, Leonard, Raangs, Erwin C., Machado, Miguel P., Mendes, Catarina I., Jesus, Tiago F., Chlebowicz, Monika, Rosema, Sigrid, Ramirez, Mário, Carriço, João A., Autenrieth, Ingo B., Friedrich, Alex W., Peter, Silke, Rossen, John W.
Publicado 2019

Mpox outbreak among men who have sex with men in Amsterdam and Rotterdam, the Netherlands: no evidence for undetected transmission prior to May 2022, a retrospective study

por de Vries, Henry J, Götz, Hannelore M, Bruisten, Sylvia, van der Eijk, Annemiek A, Prins, Maria, Oude Munnink, Bas B, Welkers, Matthijs RA, Jonges, Marcel, Molenkamp, Richard, Westerhuis, Brenda M, Schuele, Leonard, Stam, Arjen, Boter, Marjan, Hoornenborg, Elske, Mulders, Daphne, van den Lubben, Mariken, Koopmans, Marion
Publicado 2023