ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data

por Gardeux, Vincent, David, Fabrice P A, Shajkofci, Adrian, Schwalie, Petra C, Deplancke, Bart
Publicado 2017

Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes

por Schwalie, Petra C, Ward, Michelle C, Cain, Carolyn E, Faure, Andre J, Gilad, Yoav, Odom, Duncan T, Flicek, Paul
Publicado 2013

LncRNA Ctcflos orchestrates transcription and alternative splicing in thermogenic adipogenesis

por Bast‐Habersbrunner, Andrea, Kiefer, Christoph, Weber, Peter, Fromme, Tobias, Schießl, Anna, Schwalie, Petra C, Deplancke, Bart, Li, Yongguo, Klingenspor, Martin
Publicado 2021

Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

por Faure, Andre J., Schmidt, Dominic, Watt, Stephen, Schwalie, Petra C., Wilson, Michael D., Xu, Huiling, Ramsay, Robert G., Odom, Duncan T., Flicek, Paul
Publicado 2012

Dissecting the brown adipogenic regulatory network using integrative genomics

por Pradhan, Rachana N., Bues, Johannes J., Gardeux, Vincent, Schwalie, Petra C., Alpern, Daniel, Chen, Wanze, Russeil, Julie, Raghav, Sunil K., Deplancke, Bart
Publicado 2017

Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages

por Schmidt, Dominic, Schwalie, Petra C., Wilson, Michael D., Ballester, Benoit, Gonçalves, Ângela, Kutter, Claudia, Brown, Gordon D., Marshall, Aileen, Flicek, Paul, Odom, Duncan T.
Publicado 2012

Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages

por Schmidt, Dominic, Schwalie, Petra C., Wilson, Michael D., Ballester, Benoit, Gonçalves, Ângela, Kutter, Claudia, Brown, Gordon D., Marshall, Aileen, Flicek, Paul, Odom, Duncan T.
Publicado 2012

GLUT3 is induced during epithelial-mesenchymal transition and promotes tumor cell proliferation in non-small cell lung cancer

por Masin, Mark, Vazquez, Jessica, Rossi, Simona, Groeneveld, Svenja, Samson, Natasha, Schwalie, Petra C, Deplancke, Bart, Frawley, Laura E, Gouttenoire, Jérôme, Moradpour, Darius, Oliver, Trudy G, Meylan, Etienne
Publicado 2014

Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network

por Gubelmann, Carine, Schwalie, Petra C, Raghav, Sunil K, Röder, Eva, Delessa, Tenagne, Kiehlmann, Elke, Waszak, Sebastian M, Corsinotti, Andrea, Udin, Gilles, Holcombe, Wiebke, Rudofsky, Gottfried, Trono, Didier, Wolfrum, Christian, Deplancke, Bart
Publicado 2014

ZFP30 promotes adipogenesis through the KAP1-mediated activation of a retrotransposon-derived Pparg2 enhancer

por Chen, Wanze, Schwalie, Petra C., Pankevich, Eugenia V., Gubelmann, Carine, Raghav, Sunil K., Dainese, Riccardo, Cassano, Marco, Imbeault, Michael, Jang, Suk Min, Russeil, Julie, Delessa, Tenagne, Duc, Julien, Trono, Didier, Wolfrum, Christian, Deplancke, Bart
Publicado 2019

Besca, a single-cell transcriptomics analysis toolkit to accelerate translational research

por Mädler, Sophia Clara, Julien-Laferriere, Alice, Wyss, Luis, Phan, Miroslav, Sonrel, Anthony, Kang, Albert S W, Ulrich, Eric, Schmucki, Roland, Zhang, Jitao David, Ebeling, Martin, Badi, Laura, Kam-Thong, Tony, Schwalie, Petra C, Hatje, Klas
Publicado 2021

Latent Regulatory Potential of Human-Specific Repetitive Elements

por Ward, Michelle C., Wilson, Michael D., Barbosa-Morais, Nuno L., Schmidt, Dominic, Stark, Rory, Pan, Qun, Schwalie, Petra C., Menon, Suraj, Lukk, Margus, Watt, Stephen, Thybert, David, Kutter, Claudia, Kirschner, Kristina, Flicek, Paul, Blencowe, Benjamin J., Odom, Duncan T.
Publicado 2013

Combinations of Toll-like receptor 8 agonist TL8-506 activate human tumor-derived dendritic cells

por He, Mi, Soni, Bhavesh, Schwalie, Petra C, Hüsser, Tamara, Waltzinger, Caroline, De Silva, Duvini, Prinz, Ylva, Krümpelmann, Laura, Calabro, Samuele, Matos, Ines, Trumpfheller, Christine, Bacac, Marina, Umaña, Pablo, Levesque, Mitchell P, Dummer, Reinhard, van den Broek, Maries, Gasser, Stephan
Publicado 2022

Mechanism and effects of pulsatile GABA secretion from cytosolic pools in the human beta cell

por Menegaz, Danusa, Hagan, D. Walker, Almaça, Joana, Cianciaruso, Chiara, Rodriguez-Diaz, Rayner, Molina, Judith, Dolan, Robert M., Becker, Matthew W., Schwalie, Petra C., Nano, Rita, Lebreton, Fanny, Kang, Chen, Sah, Rajan, Gaisano, Herbert Y., Berggren, Per-Olof, Baekkeskov, Steinunn, Caicedo, Alejandro, Phelps, Edward A.
Publicado 2019

PD-1-cis IL-2R agonism yields better effectors from stem-like CD8(+) T cells

por Codarri Deak, Laura, Nicolini, Valeria, Hashimoto, Masao, Karagianni, Maria, Schwalie, Petra C., Lauener, Laura, Varypataki, Eleni Maria, Richard, Marine, Bommer, Esther, Sam, Johannes, Joller, Stefanie, Perro, Mario, Cremasco, Floriana, Kunz, Leo, Yanguez, Emilio, Hüsser, Tamara, Schlenker, Ramona, Mariani, Marisa, Tosevski, Vinko, Herter, Sylvia, Bacac, Marina, Waldhauer, Inja, Colombetti, Sara, Gueripel, Xavier, Wullschleger, Stephan, Tichet, Melanie, Hanahan, Douglas, Kissick, Haydn T., Leclair, Stephane, Freimoser-Grundschober, Anne, Seeber, Stefan, Teichgräber, Volker, Ahmed, Rafi, Klein, Christian, Umaña, Pablo
Publicado 2022

Insights into hominid evolution from the gorilla genome sequence

por Scally, Aylwyn, Dutheil, Julien Y., Hillier, LaDeana W., Jordan, Greg E., Goodhead, Ian, Herrero, Javier, Hobolth, Asger, Lappalainen, Tuuli, Mailund, Thomas, Marques-Bonet, Tomas, McCarthy, Shane, Montgomery, Stephen H., Schwalie, Petra C., Tang, Y. Amy, Ward, Michelle C., Xue, Yali, Yngvadottir, Bryndis, Alkan, Can, Andersen, Lars N., Ayub, Qasim, Ball, Edward V., Beal, Kathryn, Bradley, Brenda J., Chen, Yuan, Clee, Chris M., Fitzgerald, Stephen, Graves, Tina A., Gu, Yong, Heath, Paul, Heger, Andreas, Karakoc, Emre, Kolb-Kokocinski, Anja, Laird, Gavin K., Lunter, Gerton, Meader, Stephen, Mort, Matthew, Mullikin, James C., Munch, Kasper, O’Connor, Timothy D., Phillips, Andrew D., Prado-Martinez, Javier, Rogers, Anthony S., Sajjadian, Saba, Schmidt, Dominic, Shaw, Katy, Simpson, Jared T., Stenson, Peter D., Turner, Daniel J., Vigilant, Linda, Vilella, Albert J., Whitener, Weldon, Zhu, Baoli, Cooper, David N., de Jong, Pieter, Dermitzakis, Emmanouil T., Eichler, Evan E., Flicek, Paul, Goldman, Nick, Mundy, Nicholas I., Ning, Zemin, Odom, Duncan T., Ponting, Chris P., Quail, Michael A., Ryder, Oliver A., Searle, Stephen M., Warren, Wesley C., Wilson, Richard K., Schierup, Mikkel H., Rogers, Jane, Tyler-Smith, Chris, Durbin, Richard
Publicado 2012