SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

por Jungreis, Irwin, Sealfon, Rachel, Kellis, Manolis
Publicado 2020

SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

por Jungreis, Irwin, Sealfon, Rachel, Kellis, Manolis
Publicado 2020

SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

por Jungreis, Irwin, Sealfon, Rachel, Kellis, Manolis
Publicado 2021

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool

por Sealfon, Rachel SG, Hibbs, Matthew A, Huttenhower, Curtis, Myers, Chad L, Troyanskaya, Olga G
Publicado 2006

FRESCo: finding regions of excess synonymous constraint in diverse viruses

por Sealfon, Rachel S, Lin, Michael F, Jungreis, Irwin, Wolf, Maxim Y, Kellis, Manolis, Sabeti, Pardis C
Publicado 2015

High depth, whole-genome sequencing of cholera isolates from Haiti and the Dominican Republic

por Sealfon, Rachel, Gire, Stephen, Ellis, Crystal, Calderwood, Stephen, Qadri, Firdausi, Hensley, Lisa, Kellis, Manolis, Ryan, Edward T, LaRocque, Regina C, Harris, Jason B, Sabeti, Pardis C
Publicado 2012

Evaluation of the Potential Impact of Ebola Virus Genomic Drift on the Efficacy of Sequence-Based Candidate Therapeutics

por Kugelman, Jeffrey R., Sanchez-Lockhart, Mariano, Andersen, Kristian G., Gire, Stephen, Park, Daniel J., Sealfon, Rachel, Lin, Aaron E., Wohl, Shirlee, Sabeti, Pardis C., Kuhn, Jens H., Palacios, Gustavo F.
Publicado 2015

Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate

por Iserman, Christiane, Roden, Christine, Boerneke, Mark, Sealfon, Rachel, McLaughlin, Grace, Jungreis, Irwin, Park, Chris, Boppana, Avinash, Fritch, Ethan, Hou, Yixuan J., Theesfeld, Chandra, Troyanskaya, Olga G, Baric, Ralph S., Sheahan, Timothy P., Weeks, Kevin, Gladfelter, Amy S.
Publicado 2020

Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures

por Roden, Christine A, Dai, Yifan, Giannetti, Catherine A, Seim, Ian, Lee, Myungwoon, Sealfon, Rachel, McLaughlin, Grace A, Boerneke, Mark A, Iserman, Christiane, Wey, Samuel A, Ekena, Joanne L, Troyanskaya, Olga G, Weeks, Kevin M, You, Lingchong, Chilkoti, Ashutosh, Gladfelter, Amy S
Publicado 2022

Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid

por Iserman, Christiane, Roden, Christine A., Boerneke, Mark A., Sealfon, Rachel S.G., McLaughlin, Grace A., Jungreis, Irwin, Fritch, Ethan J., Hou, Yixuan J., Ekena, Joanne, Weidmann, Chase A., Theesfeld, Chandra L., Kellis, Manolis, Troyanskaya, Olga G., Baric, Ralph S., Sheahan, Timothy P., Weeks, Kevin M., Gladfelter, Amy S.
Publicado 2020

A methylation clock model of mild SARS‐CoV‐2 infection provides insight into immune dysregulation

por Mao, Weiguang, Miller, Clare M, Nair, Venugopalan D, Ge, Yongchao, Amper, Mary Anne S, Cappuccio, Antonio, George, Mary‐Catherine, Goforth, Carl W, Guevara, Kristy, Marjanovic, Nada, Nudelman, German, Pincas, Hanna, Ramos, Irene, Sealfon, Rachel S G, Soares‐Schanoski, Alessandra, Vangeti, Sindhu, Vasoya, Mital, Weir, Dawn L, Zaslavsky, Elena, Kim‐Schulze, Seunghee, Gnjatic, Sacha, Merad, Miriam, Letizia, Andrew G, Troyanskaya, Olga G, Sealfon, Stuart C, Chikina, Maria
Publicado 2023

Viable virus shedding during SARS-CoV-2 reinfection

por Letizia, Andrew G, Smith, Darci R, Ge, Yongchao, Ramos, Irene, Sealfon, Rachel S G, Goforth, Carl, Gonzalez-Reiche, Ana S, Vangeti, Sindhu, Weir, Dawn L, Alshammary, Hala, Chen, Hua Wei, George, Mary-Catherine, Soares-Schanoski, Alessandra, Lizewski, Rhonda A, Lizewski, Stephen E, Marayag, Jan, Miller, Clare M, Nunez, Edgar, Porter, Chad K, Ana, Ernesto Santa, Schilling, Megan, Sugiharto, Victor A, Sun, Peifang, Termini, Michael, van de Guchte, Adriana, Troyanskaya, Olga G, van Bakel, Harm, Sealfon, Stuart C
Publicado 2021

SARS-CoV-2 receptor networks in diabetic and COVID-19–associated kidney disease

por Menon, Rajasree, Otto, Edgar A., Sealfon, Rachel, Nair, Viji, Wong, Aaron K., Theesfeld, Chandra L., Chen, Xi, Wang, Yuan, Boppana, Avinash S., Luo, Jinghui, Yang, Yingbao, Kasson, Peter M., Schaub, Jennifer A., Berthier, Celine C., Eddy, Sean, Lienczewski, Chrysta C., Godfrey, Bradley, Dagenais, Susan L., Sohaney, Ryann, Hartman, John, Fermin, Damian, Subramanian, Lalita, Looker, Helen C., Harder, Jennifer L., Mariani, Laura H., Hodgin, Jeffrey B., Sexton, Jonathan Z., Wobus, Christiane E., Naik, Abhijit S., Nelson, Robert G., Troyanskaya, Olga G., Kretzler, Matthias
Publicado 2020

Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection

por Sauerwald, Natalie, Zhang, Zijun, Ramos, Irene, Nair, Venugopalan D., Soares-Schanoski, Alessandra, Ge, Yongchao, Mao, Weiguang, Alshammary, Hala, Gonzalez-Reiche, Ana S., van de Guchte, Adriana, Goforth, Carl W., Lizewski, Rhonda A., Lizewski, Stephen E., Amper, Mary Anne S., Vasoya, Mital, Seenarine, Nitish, Guevara, Kristy, Marjanovic, Nada, Miller, Clare M., Nudelman, German, Schilling, Megan A., Sealfon, Rachel S.G., Termini, Michael S., Vangeti, Sindhu, Weir, Dawn L., Zaslavsky, Elena, Chikina, Maria, Wu, Ying Nian, Van Bakel, Harm, Letizia, Andrew G., Sealfon, Stuart C., Troyanskaya, Olga G.
Publicado 2022

SARS-CoV-2 Transmission among Marine Recruits during Quarantine

por Letizia, Andrew G., Ramos, Irene, Obla, Ajay, Goforth, Carl, Weir, Dawn L., Ge, Yongchao, Bamman, Marcas M., Dutta, Jayeeta, Ellis, Ethan, Estrella, Luis, George, Mary-Catherine, Gonzalez-Reiche, Ana S., Graham, William D., van de Guchte, Adriana, Gutierrez, Ramiro, Jones, Franca, Kalomoiri, Aspasia, Lizewski, Rhonda, Lizewski, Stephen, Marayag, Jan, Marjanovic, Nada, Millar, Eugene V., Nair, Venugopalan D., Nudelman, German, Nunez, Edgar, Pike, Brian L., Porter, Chad, Regeimbal, James, Rirak, Stas, Santa Ana, Ernesto, Sealfon, Rachel S.G., Sebra, Robert, Simons, Mark P., Soares-Schanoski, Alessandra, Sugiharto, Victor, Termini, Michael, Vangeti, Sindhu, Williams, Carlos, Troyanskaya, Olga G., van Bakel, Harm, Sealfon, Stuart C.
Publicado 2020

Nomenclature- and Database-Compatible Names for the Two Ebola Virus Variants that Emerged in Guinea and the Democratic Republic of the Congo in 2014

por Kuhn, Jens H., Andersen, Kristian G., Baize, Sylvain, Bào, Yīmíng, Bavari, Sina, Berthet, Nicolas, Blinkova, Olga, Brister, J. Rodney, Clawson, Anna N., Fair, Joseph, Gabriel, Martin, Garry, Robert F., Gire, Stephen K., Goba, Augustine, Gonzalez, Jean-Paul, Günther, Stephan, Happi, Christian T., Jahrling, Peter B., Kapetshi, Jimmy, Kobinger, Gary, Kugelman, Jeffrey R., Leroy, Eric M., Maganga, Gael Darren, Mbala, Placide K., Moses, Lina M., Muyembe-Tamfum, Jean-Jacques, N’Faly, Magassouba, Nichol, Stuart T., Omilabu, Sunday A., Palacios, Gustavo, Park, Daniel J., Paweska, Janusz T., Radoshitzky, Sheli R., Rossi, Cynthia A., Sabeti, Pardis C., Schieffelin, John S., Schoepp, Randal J., Sealfon, Rachel, Swanepoel, Robert, Towner, Jonathan S., Wada, Jiro, Wauquier, Nadia, Yozwiak, Nathan L., Formenty, Pierre
Publicado 2014

A reference tissue atlas for the human kidney

por Hansen, Jens, Sealfon, Rachel, Menon, Rajasree, Eadon, Michael T., Lake, Blue B., Steck, Becky, Anjani, Kavya, Parikh, Samir, Sigdel, Tara K., Zhang, Guanshi, Velickovic, Dusan, Barwinska, Daria, Alexandrov, Theodore, Dobi, Dejan, Rashmi, Priyanka, Otto, Edgar A., Rivera, Miguel, Rose, Michael P., Anderton, Christopher R., Shapiro, John P., Pamreddy, Annapurna, Winfree, Seth, Xiong, Yuguang, He, Yongqun, de Boer, Ian H., Hodgin, Jeffrey B., Barisoni, Laura, Naik, Abhijit S., Sharma, Kumar, Sarwal, Minnie M., Zhang, Kun, Himmelfarb, Jonathan, Rovin, Brad, El-Achkar, Tarek M., Laszik, Zoltan, He, John Cijiang, Dagher, Pierre C., Valerius, M. Todd, Jain, Sanjay, Satlin, Lisa M., Troyanskaya, Olga G., Kretzler, Matthias, Iyengar, Ravi, Azeloglu, Evren U.
Publicado 2022

SARS-CoV-2 Outbreak Dynamics in an Isolated US Military Recruit Training Center With Rigorous Prevention Measures

por Lizewski, Rhonda A., Sealfon, Rachel S. G., Park, Sang Woo, Smith, Gregory R., Porter, Chad K., Gonzalez-Reiche, Ana S., Ge, Yongchao, Miller, Clare M., Goforth, Carl W., Pincas, Hanna, Termini, Michael S., Ramos, Irene, Nair, Venugopalan D., Lizewski, Stephen E., Alshammary, Hala, Cer, Regina Z., Chen, Hua Wei, George, Mary-Catherine, Arnold, Catherine E., Glang, Lindsay A., Long, Kyle A., Malagon, Francisco, Marayag, Jan J., Nunez, Edgar, Rice, Gregory K., Santa Ana, Ernesto, Schilling, Megan A., Smith, Darci R., Sugiharto, Victor A., Sun, Peifang, van de Guchte, Adriana, Khan, Zenab, Dutta, Jayeeta, Vangeti, Sindhu, Voegtly, Logan J., Weir, Dawn L., Metcalf, C. Jessica E., Troyanskaya, Olga G., Bishop-Lilly, Kimberly A., Grenfell, Bryan T., van Bakel, Harm, Letizia, Andrew G., Sealfon, Stuart C.
Publicado 2022

Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names

por Kuhn, Jens H., Andersen, Kristian G., Bào, Yīmíng, Bavari, Sina, Becker, Stephan, Bennett, Richard S., Bergman, Nicholas H., Blinkova, Olga, Bradfute, Steven, Brister, J. Rodney, Bukreyev, Alexander, Chandran, Kartik, Chepurnov, Alexander A., Davey, Robert A., Dietzgen, Ralf G., Doggett, Norman A., Dolnik, Olga, Dye, John M., Enterlein, Sven, Fenimore, Paul W., Formenty, Pierre, Freiberg, Alexander N., Garry, Robert F., Garza, Nicole L., Gire, Stephen K., Gonzalez, Jean-Paul, Griffiths, Anthony, Happi, Christian T., Hensley, Lisa E., Herbert, Andrew S., Hevey, Michael C., Hoenen, Thomas, Honko, Anna N., Ignatyev, Georgy M., Jahrling, Peter B., Johnson, Joshua C., Johnson, Karl M., Kindrachuk, Jason, Klenk, Hans-Dieter, Kobinger, Gary, Kochel, Tadeusz J., Lackemeyer, Matthew G., Lackner, Daniel F., Leroy, Eric M., Lever, Mark S., Mühlberger, Elke, Netesov, Sergey V., Olinger, Gene G., Omilabu, Sunday A., Palacios, Gustavo, Panchal, Rekha G., Park, Daniel J., Patterson, Jean L., Paweska, Janusz T., Peters, Clarence J., Pettitt, James, Pitt, Louise, Radoshitzky, Sheli R., Ryabchikova, Elena I., Saphire, Erica Ollmann, Sabeti, Pardis C., Sealfon, Rachel, Shestopalov, Aleksandr M., Smither, Sophie J., Sullivan, Nancy J., Swanepoel, Robert, Takada, Ayato, Towner, Jonathan S., van der Groen, Guido, Volchkov, Viktor E., Volchkova, Valentina A., Wahl-Jensen, Victoria, Warren, Travis K., Warfield, Kelly L., Weidmann, Manfred, Nichol, Stuart T.
Publicado 2014

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

por Park, Daniel J., Dudas, Gytis, Wohl, Shirlee, Goba, Augustine, Whitmer, Shannon L.M., Andersen, Kristian G., Sealfon, Rachel S., Ladner, Jason T., Kugelman, Jeffrey R., Matranga, Christian B., Winnicki, Sarah M., Qu, James, Gire, Stephen K., Gladden-Young, Adrianne, Jalloh, Simbirie, Nosamiefan, Dolo, Yozwiak, Nathan L., Moses, Lina M., Jiang, Pan-Pan, Lin, Aaron E., Schaffner, Stephen F., Bird, Brian, Towner, Jonathan, Mamoh, Mambu, Gbakie, Michael, Kanneh, Lansana, Kargbo, David, Massally, James L.B., Kamara, Fatima K., Konuwa, Edwin, Sellu, Josephine, Jalloh, Abdul A., Mustapha, Ibrahim, Foday, Momoh, Yillah, Mohamed, Erickson, Bobbie R., Sealy, Tara, Blau, Dianna, Paddock, Christopher, Brault, Aaron, Amman, Brian, Basile, Jane, Bearden, Scott, Belser, Jessica, Bergeron, Eric, Campbell, Shelley, Chakrabarti, Ayan, Dodd, Kimberly, Flint, Mike, Gibbons, Aridth, Goodman, Christin, Klena, John, McMullan, Laura, Morgan, Laura, Russell, Brandy, Salzer, Johanna, Sanchez, Angela, Wang, David, Jungreis, Irwin, Tomkins-Tinch, Christopher, Kislyuk, Andrey, Lin, Michael F., Chapman, Sinead, MacInnis, Bronwyn, Matthews, Ashley, Bochicchio, James, Hensley, Lisa E., Kuhn, Jens H., Nusbaum, Chad, Schieffelin, John S., Birren, Bruce W., Forget, Marc, Nichol, Stuart T., Palacios, Gustavo F., Ndiaye, Daouda, Happi, Christian, Gevao, Sahr M., Vandi, Mohamed A., Kargbo, Brima, Holmes, Edward C., Bedford, Trevor, Gnirke, Andreas, Ströher, Ute, Rambaut, Andrew, Garry, Robert F., Sabeti, Pardis C.
Publicado 2015