HistoMIL: A Python package for training multiple instance learning models on histopathology slides

por Pan, Shi, Secrier, Maria
Publicado 2023

PhenoTimer: Software for the Visual Mapping of Time-Resolved Phenotypic Landscapes

por Secrier, Maria, Schneider, Reinhard
Publicado 2013

Visualizing time-related data in biology, a review

por Secrier, Maria, Schneider, Reinhard
Publicado 2014

Multi-scale characterisation of homologous recombination deficiency in breast cancer

por Jacobson, Daniel H., Pan, Shi, Fisher, Jasmin, Secrier, Maria
Publicado 2023

Arena3D: visualizing time-driven phenotypic differences in biological systems

por Secrier, Maria, Pavlopoulos, Georgios A, Aerts, Jan, Schneider, Reinhard
Publicado 2012

A Comparison of Low Read Depth QuantSeq 3′ Sequencing to Total RNA-Seq in FUS Mutant Mice

por Jarvis, Seth, Birsa, Nicol, Secrier, Maria, Fratta, Pietro, Plagnol, Vincent
Publicado 2020

Pan-Cancer Survey of Tumor Mass Dormancy and Underlying Mutational Processes

por Wiecek, Anna Julia, Jacobson, Daniel Hadar, Lason, Wojciech, Secrier, Maria
Publicado 2021

Genomic and microenvironmental heterogeneity shaping epithelial-to-mesenchymal trajectories in cancer

por Malagoli Tagliazucchi, Guidantonio, Wiecek, Anna J., Withnell, Eloise, Secrier, Maria
Publicado 2023

How neurons migrate: a dynamic in-silico model of neuronal migration in the developing cortex

por Setty, Yaki, Chen, Chih-Chun, Secrier, Maria, Skoblov, Nikita, Kalamatianos, Dimitrios, Emmott, Stephen
Publicado 2011

Using graph theory to analyze biological networks

por Pavlopoulos, Georgios A, Secrier, Maria, Moschopoulos, Charalampos N, Soldatos, Theodoros G, Kossida, Sophia, Aerts, Jan, Schneider, Reinhard, Bagos, Pantelis G
Publicado 2011

Whole-genome sequencing of nine esophageal adenocarcinoma cell lines

por Contino, Gianmarco, Eldridge, Matthew D., Secrier, Maria, Bower, Lawrence, Fels Elliott, Rachael, Weaver, Jamie, Lynch, Andy G., Edwards, Paul A.W., Fitzgerald, Rebecca C.
Publicado 2016

NMJ-Analyser identifies subtle early changes in mouse models of neuromuscular disease

por Mejia Maza, Alan, Jarvis, Seth, Lee, Weaverly Colleen, Cunningham, Thomas J., Schiavo, Giampietro, Secrier, Maria, Fratta, Pietro, Sleigh, James N., Fisher, Elizabeth M. C., Sudre, Carole H.
Publicado 2021

Mutational signature dynamics shaping the evolution of oesophageal adenocarcinoma

por Abbas, Sujath, Pich, Oriol, Devonshire, Ginny, Zamani, Shahriar A., Katz-Summercorn, Annalise, Killcoyne, Sarah, Cheah, Calvin, Nutzinger, Barbara, Grehan, Nicola, Lopez-Bigas, Nuria, Fitzgerald, Rebecca C., Secrier, Maria
Publicado 2023

Molecular effects of Lapatinib in the treatment of HER2 overexpressing oesophago-gastric adenocarcinoma

por De Silva, Nadeera, Schulz, Laura, Paterson, Anna, Qain, Wendi, Secrier, Maria, Godfrey, Edmund, Cheow, Heok, O'Donovan, Maria, Lao-Sirieix, Pierre, Jobanputra, Minesh, Hochhauser, Daniel, Fitzgerald, Rebecca, Ford, Hugo
Publicado 2015

Immune Cell Abundance and T-cell Receptor Landscapes Suggest New Patient Stratification Strategies in Head and Neck Squamous Cell Carcinoma

por Secrier, Maria, McGrath, Lara, Ng, Felicia, Gulati, Sakshi, Raymond, Amelia, Nuttall, Barrett R. B., Berthe, Julie, Jones, Emma V., Sidders, Ben S., Galon, Jérôme, Barrett, J. Carl, Angell, Helen K.
Publicado 2023

NOS1AP is a novel molecular target and critical factor in TDP-43 pathology

por Cappelli, Sara, Spalloni, Alida, Feiguin, Fabian, Visani, Giulia, Šušnjar, Urša, Brown, Anna-Leigh, De Bardi, Marco, Borsellino, Giovanna, Secrier, Maria, Phatnani, Hemali, Romano, Maurizio, Fratta, Pietro, Longone, Patrizia, Buratti, Emanuele
Publicado 2022

Genomic hallmarks and therapeutic implications of G0 cell cycle arrest in cancer

por Wiecek, Anna J., Cutty, Stephen J., Kornai, Daniel, Parreno-Centeno, Mario, Gourmet, Lucie E., Tagliazucchi, Guidantonio Malagoli, Jacobson, Daniel H., Zhang, Ping, Xiong, Lingyun, Bond, Gareth L., Barr, Alexis R., Secrier, Maria
Publicado 2023

Cell environment shapes TDP-43 function with implications in neuronal and muscle disease

por Šušnjar, Urša, Škrabar, Neva, Brown, Anna-Leigh, Abbassi, Yasmine, Phatnani, Hemali, Cortese, Andrea, Cereda, Cristina, Bugiardini, Enrico, Cardani, Rosanna, Meola, Giovanni, Ripolone, Michela, Moggio, Maurizio, Romano, Maurizio, Secrier, Maria, Fratta, Pietro, Buratti, Emanuele
Publicado 2022

Genomic Analysis of Response to Neoadjuvant Chemotherapy in Esophageal Adenocarcinoma

por Izadi, Fereshteh, Sharpe, Benjamin P., Breininger, Stella P., Secrier, Maria, Gibson, Jane, Walker, Robert C., Rahman, Saqib, Devonshire, Ginny, Lloyd, Megan A., Walters, Zoë S., Fitzgerald, Rebecca C., Rose-Zerilli, Matthew J. J., Underwood, Tim J.
Publicado 2021

A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy

por Noorani, Ayesha, Bornschein, Jan, Lynch, Andy G., Secrier, Maria, Achilleos, Achilleas, Eldridge, Matthew, Bower, Lawrence, Weaver, Jamie M.J., Crawte, Jason, Ong, Chin-Ann, Shannon, Nicholas, MacRae, Shona, Grehan, Nicola, Nutzinger, Barbara, O'Donovan, Maria, Hardwick, Richard, Tavaré, Simon, Fitzgerald, Rebecca C.
Publicado 2017