Bioinformatics strategies for taxonomy independent binning and visualization of sequences in shotgun metagenomics

por Sedlar, Karel, Kupkova, Kristyna, Provaznik, Ivo
Publicado 2016

Draft Genome Sequence of Clostridium pasteurianum NRRL B-598, a Potential Butanol or Hydrogen Producer

por Kolek, Jan, Sedlář, Karel, Provazník, Ivo, Patáková, Petra
Publicado 2014

Dam and Dcm methylations prevent gene transfer into Clostridium pasteurianum NRRL B-598: development of methods for electrotransformation, conjugation, and sonoporation

por Kolek, Jan, Sedlar, Karel, Provaznik, Ivo, Patakova, Petra
Publicado 2016

Seasonal changes in microbial community composition in river water studied using 454-pyrosequencing

por Kaevska, Marija, Videnska, Petra, Sedlar, Karel, Slana, Iva
Publicado 2016

Bipartite Graphs for Visualization Analysis of Microbiome Data

por Sedlar, Karel, Videnska, Petra, Skutkova, Helena, Rychlik, Ivan, Provaznik, Ivo
Publicado 2016

Rapid Bacterial Species Delineation Based on Parameters Derived From Genome Numerical Representations

por Maderankova, Denisa, Jugas, Robin, Sedlar, Karel, Vitek, Martin, Skutkova, Helena
Publicado 2019

A degeneration-reducing criterion for optimal digital mapping of genetic codes

por Skutkova, Helena, Maderankova, Denisa, Sedlar, Karel, Jugas, Robin, Vitek, Martin
Publicado 2019

Complete Genome Sequence of Pragia fontium 24613, an Environmental Bacterium from the Family Enterobacteriaceae

por Snopková, Kateřina, Sedlář, Karel, Bosák, Juraj, Chaloupková, Eva, Provazník, Ivo, Šmajs, David
Publicado 2015

Phenotypic and Genomic Analysis of Clostridium beijerinckii NRRL B-598 Mutants With Increased Butanol Tolerance

por Vasylkivska, Maryna, Branska, Barbora, Sedlar, Karel, Jureckova, Katerina, Provaznik, Ivo, Patakova, Petra
Publicado 2020

Word Entropy-Based Approach to Detect Highly Variable Genetic Markers for Bacterial Genotyping

por Nykrynova, Marketa, Barton, Vojtech, Sedlar, Karel, Bezdicek, Matej, Lengerova, Martina, Skutkova, Helena
Publicado 2021

Characterization of Microbiota Composition and Presence of Selected Antibiotic Resistance Genes in Carriage Water of Ornamental Fish

por Gerzova, Lenka, Videnska, Petra, Faldynova, Marcela, Sedlar, Karel, Provaznik, Ivo, Cizek, Alois, Rychlik, Ivan
Publicado 2014

Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling

por Snopková, Kateřina, Sedlář, Karel, Bosák, Juraj, Chaloupková, Eva, Sedláček, Ivo, Provazník, Ivo, Šmajs, David
Publicado 2017

Stool sampling and DNA isolation kits affect DNA quality and bacterial composition following 16S rRNA gene sequencing using MiSeq Illumina platform

por Videnska, Petra, Smerkova, Kristyna, Zwinsova, Barbora, Popovici, Vlad, Micenkova, Lenka, Sedlar, Karel, Budinska, Eva
Publicado 2019

Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598

por Vasylkivska, Maryna, Jureckova, Katerina, Branska, Barbora, Sedlar, Karel, Kolek, Jan, Provaznik, Ivo, Patakova, Petra
Publicado 2019

Deeper below the surface—transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock

por Patakova, Petra, Kolek, Jan, Jureckova, Katerina, Branska, Barbora, Sedlar, Karel, Vasylkivska, Maryna, Provaznik, Ivo
Publicado 2020

First Complete Genome of the Thermophilic Polyhydroxyalkanoates-Producing Bacterium Schlegelella thermodepolymerans DSM 15344

por Musilova, Jana, Kourilova, Xenie, Bezdicek, Matej, Lengerova, Martina, Obruca, Stanislav, Skutkova, Helena, Sedlar, Karel
Publicado 2021

Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826(T), a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer

por Hermankova, Kristyna, Kourilova, Xenie, Pernicova, Iva, Bezdicek, Matej, Lengerova, Martina, Obruca, Stanislav, Sedlar, Karel
Publicado 2021

Genomic and phenotypic comparison of polyhydroxyalkanoates producing strains of genus Caldimonas/Schlegelella

por Musilova, Jana, Kourilova, Xenie, Hermankova, Kristyna, Bezdicek, Matej, Ieremenko, Anastasiia, Dvorak, Pavel, Obruca, Stanislav, Sedlar, Karel
Publicado 2023

Succession and Replacement of Bacterial Populations in the Caecum of Egg Laying Hens over Their Whole Life

por Videnska, Petra, Sedlar, Karel, Lukac, Maja, Faldynova, Marcela, Gerzova, Lenka, Cejkova, Darina, Sisak, Frantisek, Rychlik, Ivan
Publicado 2014

Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq

por Sedlar, Karel, Koscova, Pavlina, Vasylkivska, Maryna, Branska, Barbora, Kolek, Jan, Kupkova, Kristyna, Patakova, Petra, Provaznik, Ivo
Publicado 2018