Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments

por Seemann, Stefan E., Gorodkin, Jan, Backofen, Rolf
Publicado 2008

Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions

por Seemann, Stefan E, Richter, Andreas S, Gorodkin, Jan, Backofen, Rolf
Publicado 2010

The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences

por Seemann, Stefan E., Menzel, Peter, Backofen, Rolf, Gorodkin, Jan
Publicado 2011

Quality Assessment of Domesticated Animal Genome Assemblies

por Seemann, Stefan E., Anthon, Christian, Palasca, Oana, Gorodkin, Jan
Publicado 2016

Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures

por Sabarinathan, Radhakrishnan, Anthon, Christian, Gorodkin, Jan, Seemann, Stefan E.
Publicado 2018

PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences

por Seemann, Stefan E., Richter, Andreas S., Gesell, Tanja, Backofen, Rolf, Gorodkin, Jan
Publicado 2011

DotAligner: identification and clustering of RNA structure motifs

por Smith, Martin A., Seemann, Stefan E., Quek, Xiu Cheng, Mattick, John S.
Publicado 2017

CRISPRroots: on- and off-target assessment of RNA-seq data in CRISPR–Cas9 edited cells

por Corsi, Giulia I, Gadekar, Veerendra P, Gorodkin, Jan, Seemann, Stefan E
Publicado 2021

Associating transcription factors and conserved RNA structures with gene regulation in the human brain

por Hecker, Nikolai, Seemann, Stefan E., Silahtaroglu, Asli, Ruzzo, Walter L., Gorodkin, Jan
Publicado 2017

Detection of RNA structures in porcine EST data and related mammals

por Seemann, Stefan E, Gilchrist, Michael J, Hofacker, Ivo L, Stadler, Peter F, Gorodkin, Jan
Publicado 2007

Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain

por Seemann, Stefan E, Sunkin, Susan M, Hawrylycz, Michael J, Ruzzo, Walter L, Gorodkin, Jan
Publicado 2012

RNAsnp: Efficient Detection of Local RNA Secondary Structure Changes Induced by SNPs

por Sabarinathan, Radhakrishnan, Tafer, Hakim, Seemann, Stefan E, Hofacker, Ivo L, Stadler, Peter F, Gorodkin, Jan
Publicado 2013

RNAsnp: Efficient Detection of Local RNA Secondary Structure Changes Induced by SNPs

por Sabarinathan, Radhakrishnan, Tafer, Hakim, Seemann, Stefan E, Hofacker, Ivo L, Stadler, Peter F, Gorodkin, Jan
Publicado 2013

The RNAsnp web server: predicting SNP effects on local RNA secondary structure

por Sabarinathan, Radhakrishnan, Tafer, Hakim, Seemann, Stefan E., Hofacker, Ivo L., Stadler, Peter F., Gorodkin, Jan
Publicado 2013

Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domain

por Sükösd, Zsuzsanna, Andersen, Ebbe S., Seemann, Stefan E., Jensen, Mads Krogh, Hansen, Mathias, Gorodkin, Jan, Kjems, Jørgen
Publicado 2015

RNAscClust: clustering RNA sequences using structure conservation and graph based motifs

por Miladi, Milad, Junge, Alexander, Costa, Fabrizio, Seemann, Stefan E, Havgaard, Jakob Hull, Gorodkin, Jan, Backofen, Rolf
Publicado 2017

Identification and characterization of novel conserved RNA structures in Drosophila

por Kirsch, Rebecca, Seemann, Stefan E., Ruzzo, Walter L., Cohen, Stephen M., Stadler, Peter F., Gorodkin, Jan
Publicado 2018

Proteomic profiling of the thrombin-activated canine platelet secretome (CAPS)

por Cremer, Signe E., Catalfamo, James L., Goggs, Robert, Seemann, Stefan E., Kristensen, Annemarie T., Brooks, Marjory B.
Publicado 2019

Modelling Nonalcoholic Steatohepatitis In Vivo—A Close Transcriptomic Similarity Supports the Guinea Pig Disease Model

por Skat-Rørdam, Josephine, Ipsen, David H., Seemann, Stefan E., Latta, Markus, Lykkesfeldt, Jens, Tveden-Nyborg, Pernille
Publicado 2021

RNA-Seq Study on the Longissimus thoracis Muscle of Italian Large White Pigs Fed Extruded Linseed with or without Antioxidants and Polyphenols

por Vegni, Jacopo, Sun, Ying, Seemann, Stefan E., Zappaterra, Martina, Davoli, Roberta, Dall’Olio, Stefania, Gorodkin, Jan, Zambonelli, Paolo
Publicado 2023