A pathway-based data integration framework for prediction of disease progression

por Seoane, José A., Day, Ian N. M., Gaunt, Tom R., Campbell, Colin
Publicado 2014

Machine Learning Based Microbiome Signature to Predict Inflammatory Bowel Disease Subtypes

por Liñares-Blanco, Jose, Fernandez-Lozano, Carlos, Seoane, Jose A., López-Campos, Guillermo
Publicado 2022

Canonical Correlation Analysis for Gene-Based Pleiotropy Discovery

por Seoane, Jose A., Campbell, Colin, Day, Ian N. M., Casas, Juan P., Gaunt, Tom R.
Publicado 2014

Chromatin Regulators Mediate Anthracycline Sensitivity in Breast Cancer

por Seoane, Jose A., Kirkland, Jacob G., Caswell-Jin, Jennifer L., Crabtree, Gerald R., Curtis, Christina
Publicado 2019

RRegrs: an R package for computer-aided model selection with multiple regression models

por Tsiliki, Georgia, Munteanu, Cristian R., Seoane, Jose A., Fernandez-Lozano, Carlos, Sarimveis, Haralambos, Willighagen, Egon L.
Publicado 2015

Machine Learning Techniques for Single Nucleotide Polymorphism—Disease Classification Models in Schizophrenia

por Aguiar-Pulido, Vanessa, Seoane, José A., Rabuñal, Juan R., Dorado, Julián, Pazos, Alejandro, Munteanu, Cristian R.
Publicado 2010

Texture analysis in gel electrophoresis images using an integrative kernel-based approach

por Fernandez-Lozano, Carlos, Seoane, Jose A., Gestal, Marcos, Gaunt, Tom R., Dorado, Julian, Pazos, Alejandro, Campbell, Colin
Publicado 2016

Quantitative evidence for early metastatic seeding in colorectal cancer

por Hu, Zheng, Ding, Jie, Ma, Zhicheng, Sun, Ruping, Seoane, Jose A., Shaffer, J. Scott, Suarez, Carlos J, Berghoff, Anna S, Cremolini, Chiara, Falcone, Alfredo, Loupakis, Fotios, Birner, Peter, Preusser, Matthias, Lenz, Heinz-Josef, Curtis, Christina
Publicado 2019

Assessment of ERBB2/HER2 Status in HER2-Equivocal Breast Cancers by FISH and 2013/2014 ASCO-CAP Guidelines

por Press, Michael F., Seoane, Jose A., Curtis, Christina, Quinaux, Emmanuel, Guzman, Roberta, Sauter, Guido, Eiermann, Wolfgang, Mackey, John R., Robert, Nicholas, Pienkowski, Tadeusz, Crown, John, Martin, Miguel, Valero, Vicente, Bee, Valerie, Ma, Yanling, Villalobos, Ivonne, Slamon, Dennis J.
Publicado 2018

Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer

por Hu, Zhi, Mao, Jian-Hua, Curtis, Christina, Huang, Ge, Gu, Shenda, Heiser, Laura, Lenburg, Marc E., Korkola, James E., Bayani, Nora, Samarajiwa, Shamith, Seoane, Jose A., A. Dane, Mark, Esch, Amanda, Feiler, Heidi S., Wang, Nicholas J., Hardwicke, Mary Ann, Laquerre, Sylvie, Jackson, Jeff, W. Wood, Kenneth, Weber, Barbara, Spellman, Paul T., Aparicio, Samuel, Wooster, Richard, Caldas, Carlos, Gray, Joe W.
Publicado 2016

Erratum to: Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer

por Hu, Zhi, Mao, Jian-Hua, Curtis, Christina, Huang, Ge, Gu, Shenda, Heiser, Laura, Lenburg, Marc E., Korkola, James E., Bayani, Nora, Samarajiwa, Shamith, Seoane, Jose A., Dane, Mark A., Esch, Amanda, Feiler, Heidi S., Wang, Nicholas J., Hardwicke, Mary Ann, Laquerre, Sylvie, Jackson, Jeff, Wood, Kenneth W., Weber, Barbara, Spellman, Paul T., Aparicio, Samuel, Wooster, Richard, Caldas, Carlos, Gray, Joe W.
Publicado 2017

Dynamics of breast cancer relapse reveal late recurring ER-positive genomic subgroups

por Rueda, Oscar M., Sammut, Stephen-John, Seoane, Jose A, Chin, Suet-Feung, Caswell-Jin, Jennifer L, Callari, Maurizio, Batra, Rajbir, Pereira, Bernard, Bruna, Alejandra, Ali, H Raza, Provenzano, Elena, Liu, Bin, Parisien, Michelle, Gillett, Cheryl, McKinney, Steven, Green, Andrew R., Murphy, Leigh, Purushotham, Arnie, Ellis, Ian O., Pharoah, Paul D., Rueda, Cristina, Aparicio, Samuel AJR, Caldas, Carlos, Curtis, Christina
Publicado 2019

CRISPR screens in cancer spheroids identify 3D growth specific vulnerabilities

por Han, Kyuho, Pierce, Sarah E., Li, Amy, Spees, Kaitlyn, Anderson, Gray R., Seoane, Jose A., Lo, Yuan-Hung, Dubreuil, Michael, Olivas, Micah, Kamber, Roarke A., Wainberg, Michael, Kostyrko, Kaja, Kelly, Marcus R., Yousefi, Maryam, Simpkins, Scott W., Yao, David, Lee, Keonil, Kuo, Calvin J., Jackson, Peter K., Sweet-Cordero, Alejandro, Kundaje, Anshul, Gentles, Andrew J., Curtis, Christina, Winslow, Monte M., Bassik, Michael C.
Publicado 2020

Molecular classification and biomarkers of clinical outcome in breast ductal carcinoma in situ: Analysis of TBCRC 038 and RAHBT cohorts

por Strand, Siri H., Rivero-Gutiérrez, Belén, Houlahan, Kathleen E., Seoane, Jose A., King, Lorraine M., Risom, Tyler, Simpson, Lunden A., Vennam, Sujay, Khan, Aziz, Cisneros, Luis, Hardman, Timothy, Harmon, Bryan, Couch, Fergus, Gallagher, Kristalyn, Kilgore, Mark, We, Shi, DeMichele, Angela, King, Tari, McAuliffe, Priscilla F., Nangia, Julie, Lee, Joanna, Tseng, Jennifer, Storniolo, Anna Maria, Thompson, Alastair M., Gupta, Gaorav P., Burns, Robyn, Veis, Deborah J., DeSchryver, Katherine, Zhu, Chunfang, Matusiak, Magdalena, Wang, Jason, Zhu, Shirley X., Tappenden, Jen, Ding, Daisy Yi, Zhang, Dadong, Luo, Jingqin, Jiang, Shu, Varma, Sushama, Anderson, Lauren, Straub, Cody, Srivastava, Sucheta, Curtis, Christina, Tibshirani, Rob, Angelo, Robert Michael, Hall, Allison, Owzar, Kouros, Polyak, Kornelia, Maley, Carlo, Marks, Jeffrey R., Colditz, Graham A., Shelley Hwang, E., West, Robert B.
Publicado 2023