SIS: a program to generate draft genome sequence scaffolds for prokaryotes

por Dias, Zanoni, Dias, Ulisses, Setubal, João C
Publicado 2012

REGEN: Ancestral Genome Reconstruction for Bacteria

por Yang, Kuan, Heath, Lenwood S., Setubal, João C.
Publicado 2012

Editorial: Computational Methods for Microbiome Analysis

por Setubal, João C., Stoye, Jens, Dutilh, Bas E.
Publicado 2020

Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology

por Tseng, Tsai-Tien, Tyler, Brett M, Setubal, João C
Publicado 2009

MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins

por Amgarten, Deyvid, Braga, Lucas P. P., da Silva, Aline M., Setubal, João C.
Publicado 2018

Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes

por Dos Santos, Patricia C, Fang, Zhong, Mason, Steven W, Setubal, João C, Dixon, Ray
Publicado 2012

Genetic resources for advanced biofuel production described with the Gene Ontology

por Torto-Alalibo, Trudy, Purwantini, Endang, Lomax, Jane, Setubal, João C., Mukhopadhyay, Biswarup, Tyler, Brett M.
Publicado 2014

Genetic resources for methane production from biomass described with the Gene Ontology

por Purwantini, Endang, Torto-Alalibo, Trudy, Lomax, Jane, Setubal, João C., Tyler, Brett M., Mukhopadhyay, Biswarup
Publicado 2014

An Efficient, Nonphylogenetic Method for Detecting Genes Sharing Evolutionary Signals in Phylogenomic Data Sets

por Rangel, Luiz Thibério, Soucy, Shannon M, Setubal, João C, Gogarten, Johann Peter, Fournier, Gregory P
Publicado 2021

Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions

por Venancio, Thiago M, DeMarco, Ricardo, Almeida, Giulliana T, Oliveira, Katia C, Setubal, João C, Verjovski-Almeida, Sergio
Publicado 2007

Transcriptomes of Ralstonia solanacearum during Root Colonization of Solanum commersonii

por Puigvert, Marina, Guarischi-Sousa, Rodrigo, Zuluaga, Paola, Coll, Núria S., Macho, Alberto P., Setubal, João C., Valls, Marc
Publicado 2017

Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031

por Guarischi-Sousa, Rodrigo, Puigvert, Marina, Coll, Núria S., Siri, María Inés, Pianzzola, María Julia, Valls, Marc, Setubal, João C.
Publicado 2016

Sequence verification of synthetic DNA by assembly of sequencing reads

por Wilson, Mandy L., Cai, Yizhi, Hanlon, Regina, Taylor, Samantha, Chevreux, Bastien, Setubal, João C., Tyler, Brett M., Peccoud, Jean
Publicado 2013

Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios

por Braga, Lucas P. P., Spor, Aymé, Kot, Witold, Breuil, Marie-Christine, Hansen, Lars H., Setubal, João C., Philippot, Laurent
Publicado 2020

Longitudinal 16S rRNA gut microbiota data of infant triplets show partial susceptibility to host genetics

por Palmeira, Ondina, Matos, Larissa R.B., Naslavsky, Michel S., Bueno, Heloisa M.S., Soler, Júlia P., Setubal, João C., Zatz, Mayana
Publicado 2022

Comparative Analysis of Ralstonia solanacearum Methylomes

por Erill, Ivan, Puigvert, Marina, Legrand, Ludovic, Guarischi-Sousa, Rodrigo, Vandecasteele, Céline, Setubal, João C., Genin, Stephane, Guidot, Alice, Valls, Marc
Publicado 2017

Developing Bioinformatic Resources for Coronaviruses

por Baker, Susan C., Jukneliene, Dalia, Purkayastha, Anjan, Snyder, Eric E., Crasta, Oswald R., Czar, Michael J., Setubal, Joao C., Sobral, Bruno W.
Publicado 2006

Next-Generation Phage Display: Integrating and Comparing Available Molecular Tools to Enable Cost-Effective High-Throughput Analysis

por Dias-Neto, Emmanuel, Nunes, Diana N., Giordano, Ricardo J., Sun, Jessica, Botz, Gregory H., Yang, Kuan, Setubal, João C., Pasqualini, Renata, Arap, Wadih
Publicado 2009

Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range

por Jalan, Neha, Kumar, Dibyendu, Andrade, Maxuel O, Yu, Fahong, Jones, Jeffrey B, Graham, James H, White, Frank F, Setubal, João C, Wang, Nian
Publicado 2013

Microbiomes of Field-Grown Maize and Soybean in Southeastern and Central Brazil Inferred by High-Throughput 16S and Internal Transcribed Spacer Amplicon Sequencing

por Rossmann, Maike, Thomas, Andrew Maltez, Guima, Suzana Sato, Martins, Layla Farage, Inderbitzin, Patrik, Knight-Connoni, Victoria, da Silva, Aline Maria, Setubal, João C.
Publicado 2021