The Genome Reverse Compiler: an explorative annotation tool

por Warren, Andrew S, Setubal, João Carlos
Publicado 2009

Missing genes in the annotation of prokaryotic genomes

por Warren, Andrew S, Archuleta, Jeremy, Feng, Wu-chun, Setubal, João Carlos
Publicado 2010

Identification and characterization of putative Aeromonas spp. T3SS effectors

por Rangel, Luiz Thiberio, Marden, Jeremiah, Colston, Sophie, Setubal, João Carlos, Graf, Joerg, Gogarten, Johann Peter
Publicado 2019

Oxygen-induced pathological angiogenesis promotes intense lipid synthesis and remodeling in the retina

por Inague, Alex, Alecrim, Lilian Costa, Monteiro, Jhonatas Sirino, Yoshinaga, Marcos Yukio, Setubal, João Carlos, Miyamoto, Sayuri, Giordano, Ricardo José
Publicado 2023

Characterization of metagenome-assembled genomes from the International Space Station

por Singh, Nitin K., Wood, Jason M., Patane, Jose, Moura, Livia Maria Silva, Lombardino, Jonathan, Setubal, João Carlos, Venkateswaran, Kasthuri
Publicado 2023

Competing Endogenous RNA in Colorectal Cancer: An Analysis for Colon, Rectum, and Rectosigmoid Junction

por Vieira, Lucas Maciel, Jorge, Natasha Andressa Nogueira, de Sousa, João Batista, Setubal, João Carlos, Stadler, Peter F., Walter, Maria Emília Machado Telles
Publicado 2021

The complete mitochondrial genome of Bothrops jararaca (Reptilia, Serpentes, Viperidae)

por Almeida, Diego Dantas, Kitajima, João Paulo, Nishiyama, Milton Yutaka, Condomitti, George Willian, de Oliveira, Ursula Castro, Setúbal, João Carlos, Junqueira-de-Azevedo, Inácio L. M.
Publicado 2016

Anti-Trypanosoma cruzi antibody profiling in patients with Chagas disease treated with benznidazole assessed by genome phage display

por Rodriguez Carnero, Luis Antonio, Kuramoto, Andréia, Campos de Oliveira, Léa, Monteiro, Jhonatas Sirino, Setubal, João Carlos, Cunha-Neto, Edécio, Cerdeira Sabino, Ester, Giordano, Ricardo José
Publicado 2023

Plasmid-mediated mcr-1 in carbapenem-susceptible Escherichia coli ST156 causing a blood infection: an unnoticeable spread of colistin resistance in Brazil?

por Rossi, Flavia, Girardello, Raquel, Morais, Carlos, Cury, Ana Paula, Martins, Layla Farage, da Silva, Aline Maria, Abdala, Edson, Setubal, João Carlos, da Silva Duarte, Alberto José
Publicado 2017

Isolation and characterization of vB_XciM_LucasX, a new jumbo phage that infects Xanthomonas citri and Xanthomonas fuscans

por Marquioni, Vinícius, Rossi, Fernando Pacheco Nobre, Mendonça, Deborah Cezar, Martins, Layla Farage, Behlau, Franklin, Setubal, João Carlos, da Silva, Aline Maria, Novo-Mansur, Maria Teresa Marques
Publicado 2022

Assessing the efficacy of eDNA metabarcoding for measuring microbial biodiversity within forest ecosystems

por Ladin, Zachary S., Ferrell, Barbra, Dums, Jacob T., Moore, Ryan M., Levia, Delphis F., Shriver, W. Gregory, D’Amico, Vincent, Trammell, Tara L. E., Setubal, João Carlos, Wommack, K. Eric
Publicado 2021

Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions

por Braga, Lucas Palma Perez, Pereira, Roberta Verciano, Martins, Layla Farage, Moura, Livia Maria Silva, Sanchez, Fabio Beltrame, Patané, José Salvatore Leister, da Silva, Aline Maria, Setubal, João Carlos
Publicado 2021

Protocol for design, construction, and selection of genome phage (gPhage) display libraries

por Rodriguez Carnero, Luis Antonio, Reis Teixeira, André Azevedo, Fen Tang, Fenny Hui, Kuramoto, Andréia, Manso Alves, Maria Júlia, Colli, Walter, Setubal, João Carlos, Cunha-Neto, Edécio, Pasqualini, Renata, Arap, Wadih, Giordano, Ricardo José
Publicado 2021

Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages

por Amgarten, Deyvid, Martins, Layla Farage, Lombardi, Karen Cristina, Antunes, Luciana Principal, de Souza, Ana Paula Silva, Nicastro, Gianlucca Gonçalves, Kitajima, Elliott Watanabe, Quaggio, Ronaldo Bento, Upton, Chris, Setubal, João Carlos, da Silva, Aline Maria
Publicado 2017

Alcohol and tobacco consumption affects bacterial richness in oral cavity mucosa biofilms

por Thomas, Andrew Maltez, Gleber-Netto, Frederico Omar, Fernandes, Gustavo Ribeiro, Amorim, Maria, Barbosa, Luisa Fernanda, Francisco, Ana Lúcia Noronha, Guerra de Andrade, Arthur, Setubal, João Carlos, Kowalski, Luiz Paulo, Nunes, Diana Noronha, Dias-Neto, Emmanuel
Publicado 2014

Genomic Characterization of mcr-1.1-Producing Escherichia coli Recovered From Human Infections in São Paulo, Brazil

por Girardello, Raquel, Piroupo, Carlos Morais, Martins, Joaquim, Maffucci, Marcia Helena, Cury, Ana Paula, Franco, Maria Renata Gomes, Malta, Fernanda de Mello, Rocha, Natália Conceição, Pinho, João Renato Rebello, Rossi, Flavia, Duarte, Alberto José da Silva, Setubal, João Carlos
Publicado 2021

Genomic Characterization of Bacillus safensis Isolated from Mine Tailings in Peru and Evaluation of Its Cyanide-Degrading Enzyme CynD

por Justo Arevalo, Santiago, Zapata Sifuentes, Daniela, Cuba Portocarrero, Andrea, Brescia Reátegui, Michella, Monge Pimentel, Claudia, Farage Martins, Layla, Marques Pierry, Paulo, Morais Piroupo, Carlos, Guerra Santa Cruz, Alcides, Quiñones Aguilar, Mauro, Shaker Farah, Chuck, Setubal, João Carlos, da Silva, Aline Maria
Publicado 2022

Transcriptional signatures underlying dynamic phenotypic switching and novel disease biomarkers in a linear cellular model of melanoma progression

por Pessoa, Diogo de Oliveira, Rius, Flávia Eichemberger, Papaiz, Debora D'Angelo, Ayub, Ana Luísa Pedroso, Morais, Alice Santana, de Souza, Camila Ferreira, da Paixão, Vinicius Ferreira, Setubal, João Carlos, Newton-Bishop, Julia, Nsengimana, Jérémie, Azevedo, Hatylas, Reis, Eduardo Moraes, Jasiulionis, Miriam Galvonas
Publicado 2021

Characterization of novel hydrocarbon-degrading Gordonia paraffinivorans and Gordonia sihwensis strains isolated from composting

por Silva, Natalia Maria, de Oliveira, Aline Márcia Silva Araújo, Pegorin, Stefania, Giusti, Camila Escandura, Ferrari, Vitor Batista, Barbosa, Deibs, Martins, Layla Farage, Morais, Carlos, Setubal, João Carlos, Vasconcellos, Suzan Pantaroto, da Silva, Aline Maria, de Oliveira, Julio Cezar Franco, Pascon, Renata Castiglioni, Viana-Niero, Cristina
Publicado 2019

Global Distribution and Evolution of Mycobacterium bovis Lineages

por Zimpel, Cristina Kraemer, Patané, José Salvatore L., Guedes, Aureliano Coelho Proença, de Souza, Robson F., Silva-Pereira, Taiana T., Camargo, Naila C. Soler, de Souza Filho, Antônio F., Ikuta, Cássia Y., Neto, José Soares Ferreira, Setubal, João Carlos, Heinemann, Marcos Bryan, Guimaraes, Ana Marcia Sa
Publicado 2020