Detecting and correcting misclassified sequences in the large-scale public databases

por Bagheri, Hamid, Severin, Andrew J, Rajan, Hridesh
Publicado 2020

Shared data science infrastructure for genomics data

por Bagheri, Hamid, Muppirala, Usha, Masonbrink, Rick E., Severin, Andrew J., Rajan, Hridesh
Publicado 2019

Microbiome analyses of pacific white shrimp (Litopenaeus vannamei) collected from disparate geographical locations

por Seetharam, Arun S., Kawaler, Emily, Du, Zhi-Qiang, Rothschild, Max F., Severin, Andrew J.
Publicado 2015

Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum

por Lanubile, Alessandra, Muppirala, Usha K., Severin, Andrew J., Marocco, Adriano, Munkvold, Gary P.
Publicado 2015

Oral Treatments With Probiotics and Live Salmonella Vaccine Induce Unique Changes in Gut Neurochemicals and Microbiome in Chickens

por Redweik, Graham A. J., Daniels, Karrie, Severin, Andrew J., Lyte, Mark, Mellata, Melha
Publicado 2020

Systematic in vitro specificity profiling reveals nicking defects in natural and engineered CRISPR–Cas9 variants

por Murugan, Karthik, Suresh, Shravanti K, Seetharam, Arun S, Severin, Andrew J, Sashital, Dipali G
Publicado 2021

A comparative analysis of methylome profiles of Campylobacter jejuni sheep abortion isolate and gastroenteric strains using PacBio data

por Mou, Kathy T., Muppirala, Usha K., Severin, Andrew J., Clark, Tyson A., Boitano, Matthew, Plummer, Paul J.
Publicado 2015

Insights into teleost sex determination from the Seriola dorsalis genome assembly

por Purcell, Catherine M., Seetharam, Arun S., Snodgrass, Owyn, Ortega-García, Sofia, Hyde, John R., Severin, Andrew J.
Publicado 2018

polishCLR: A Nextflow Workflow for Polishing PacBio CLR Genome Assemblies

por Chang, Jennifer, Stahlke, Amanda R, Chudalayandi, Sivanandan, Rosen, Benjamin D, Childers, Anna K, Severin, Andrew J
Publicado 2023

SCNBase: a genomics portal for the soybean cyst nematode (Heterodera glycines)

por Masonbrink, Rick, Maier, Tom R, Seetharam, Arun S, Juvale, Parijat S, Baber, Levi, Baum, Thomas J, Severin, Andrew J
Publicado 2019

CRISPR interference and priming varies with individual spacer sequences

por Xue, Chaoyou, Seetharam, Arun S., Musharova, Olga, Severinov, Konstantin, J. Brouns, Stan J., Severin, Andrew J., Sashital, Dipali G.
Publicado 2015

Heterodera glycines utilizes promiscuous spliced leaders and demonstrates a unique preference for a species-specific spliced leader over C. elegans SL1

por Barnes, Stacey N., Masonbrink, Rick E., Maier, Thomas R., Seetharam, Arun, Sindhu, Anoop S., Severin, Andrew J., Baum, Thomas J.
Publicado 2019

An Annotated Genome for Haliotis rufescens (Red Abalone) and Resequenced Green, Pink, Pinto, Black, and White Abalone Species

por Masonbrink, Rick E, Purcell, Catherine M, Boles, Sara E, Whitehead, Andrew, Hyde, John R, Seetharam, Arun S, Severin, Andrew J
Publicado 2019

Sociality sculpts similar patterns of molecular evolution in two independently evolved lineages of eusocial bees

por Shell, Wyatt A., Steffen, Michael A., Pare, Hannah K., Seetharam, Arun S., Severin, Andrew J., Toth, Amy L., Rehan, Sandra M.
Publicado 2021

Transcriptional analysis of phloem-associated cells of potato

por Lin, Tian, Lashbrook, Coralie C., Cho, Sung Ki, Butler, Nathaniel M., Sharma, Pooja, Muppirala, Usha, Severin, Andrew J., Hannapel, David J.
Publicado 2015

The In-Feed Antibiotic Carbadox Induces Phage Gene Transcription in the Swine Gut Microbiome

por Johnson, Timothy A., Looft, Torey, Severin, Andrew J., Bayles, Darrell O., Nasko, Daniel J., Wommack, K. Eric, Howe, Adina, Allen, Heather K.
Publicado 2017

Vascular Endothelial Growth Factor A and Leptin Expression Associated with Ectopic Proliferation and Retinal Dysplasia in Zebrafish Optic Pathway Tumors

por Schultz, Laura E., Solin, Staci L., Wierson, Wesley A., Lovan, Janna M., Syrkin-Nikolau, Judith, Lincow, Deborah E., Severin, Andrew J., Sakaguchi, Donald S., McGrail, Maura
Publicado 2017

Differential Transcriptomic Profiles Following Stimulation with Lipopolysaccharide in Intestinal Organoids from Dogs with Inflammatory Bowel Disease and Intestinal Mast Cell Tumor

por Sahoo, Dipak Kumar, Borcherding, Dana C., Chandra, Lawrance, Jergens, Albert E., Atherly, Todd, Bourgois-Mochel, Agnes, Ellinwood, N. Matthew, Snella, Elizabeth, Severin, Andrew J., Martin, Martin, Allenspach, Karin, Mochel, Jonathan P.
Publicado 2022

The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

por Masonbrink, Rick, Maier, Tom R., Muppirala, Usha, Seetharam, Arun S., Lord, Etienne, Juvale, Parijat S., Schmutz, Jeremy, Johnson, Nathan T., Korkin, Dmitry, Mitchum, Melissa G., Mimee, Benjamin, den Akker, Sebastian Eves-van, Hudson, Matthew, Severin, Andrew J., Baum, Thomas J.
Publicado 2019

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

por Severin, Andrew J, Woody, Jenna L, Bolon, Yung-Tsi, Joseph, Bindu, Diers, Brian W, Farmer, Andrew D, Muehlbauer, Gary J, Nelson, Rex T, Grant, David, Specht, James E, Graham, Michelle A, Cannon, Steven B, May, Gregory D, Vance, Carroll P, Shoemaker, Randy C
Publicado 2010