ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data

por Severin, Jessica, Agrawal, Saumya, Ramilowski, Jordan A, Deviatiiarov, Ruslan, Shin, Jay W, Carninci, Piero, de Hoon, Michiel
Publicado 2023

Use of Acupuncture for Adult Health Conditions, 2013 to 2021: A Systematic Review

por Allen, Jennifer, Mak, Selene S., Begashaw, Meron, Larkin, Jody, Miake-Lye, Isomi, Beroes-Severin, Jessica, Olson, Juli, Shekelle, Paul G.
Publicado 2022

eHive: An Artificial Intelligence workflow system for genomic analysis

por Severin, Jessica, Beal, Kathryn, Vilella, Albert J, Fitzgerald, Stephen, Schuster, Michael, Gordon, Leo, Ureta-Vidal, Abel, Flicek, Paul, Herrero, Javier
Publicado 2010

FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies

por Abugessaisa, Imad, Noguchi, Shuhei, Hasegawa, Akira, Harshbarger, Jayson, Kondo, Atsushi, Lizio, Marina, Severin, Jessica, Carninci, Piero, Kawaji, Hideya, Kasukawa, Takeya
Publicado 2017

Massage for Pain: An Evidence Map

por Miake-Lye, Isomi M., Mak, Selene, Lee, Jason, Luger, Tana, Taylor, Stephanie L., Shanman, Roberta, Beroes-Severin, Jessica M., Shekelle, Paul G.
Publicado 2019

Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions

por Davis, Margaret R., Andersson, Robin, Severin, Jessica, de Hoon, Michiel, Bertin, Nicolas, Baillie, J. Kenneth, Kawaji, Hideya, Sandelin, Albin, Forrest, Alistair R.R., Summers, Kim M.
Publicado 2014

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

por Kawaji, Hideya, Severin, Jessica, Lizio, Marina, Waterhouse, Andrew, Katayama, Shintaro, Irvine, Katharine M, Hume, David A, Forrest, Alistair RR, Suzuki, Harukazu, Carninci, Piero, Hayashizaki, Yoshihide, Daub, Carsten O
Publicado 2009

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

por Kawaji, Hideya, Severin, Jessica, Lizio, Marina, Forrest, Alistair R. R., van Nimwegen, Erik, Rehli, Michael, Schroder, Kate, Irvine, Katharine, Suzuki, Harukazu, Carninci, Piero, Hayashizaki, Yoshihide, Daub, Carsten O.
Publicado 2011

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line

por Lizio, Marina, Ishizu, Yuri, Itoh, Masayoshi, Lassmann, Timo, Hasegawa, Akira, Kubosaki, Atsutaka, Severin, Jessica, Kawaji, Hideya, Nakamura, Yukio, Suzuki, Harukazu, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R. R.
Publicado 2015

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

por Lizio, Marina, Abugessaisa, Imad, Noguchi, Shuhei, Kondo, Atsushi, Hasegawa, Akira, Hon, Chung Chau, de Hoon, Michiel, Severin, Jessica, Oki, Shinya, Hayashizaki, Yoshihide, Carninci, Piero, Kasukawa, Takeya, Kawaji, Hideya
Publicado 2019

Reconstruction of Monocyte Transcriptional Regulatory Network Accompanies Monocytic Functions in Human Fibroblasts

por Suzuki, Takahiro, Nakano-Ikegaya, Mika, Yabukami-Okuda, Haruka, de Hoon, Michiel, Severin, Jessica, Saga-Hatano, Satomi, Shin, Jay W., Kubosaki, Atsutaka, Simon, Christophe, Hasegawa, Yuki, Hayashizaki, Yoshihide, Suzuki, Harukazu
Publicado 2012

The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1

por Gažová, Iveta, Lefevre, Lucas, Bush, Stephen J., Clohisey, Sara, Arner, Erik, de Hoon, Michiel, Severin, Jessica, van Duin, Lucas, Andersson, Robin, Lengeling, Andreas, Hume, David A., Summers, Kim M.
Publicado 2020

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

por Bertin, Nicolas, Mendez, Mickaël, Hasegawa, Akira, Lizio, Marina, Abugessaisa, Imad, Severin, Jessica, Sakai-Ohno, Mizuho, Lassmann, Timo, Kasukawa, Takeya, Kawaji, Hideya, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Carninci, Piero, Plessy, Charles
Publicado 2017

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

por Severin, Jessica, Waterhouse, Andrew M, Kawaji, Hideya, Lassmann, Timo, van Nimwegen, Erik, Balwierz, Piotr J, de Hoon, Michiel JL, Hume, David A, Carninci, Piero, Hayashizaki, Yoshihide, Suzuki, Harukazu, Daub, Carsten O, Forrest, Alistair RR
Publicado 2009

Monitoring transcription initiation activities in rat and dog

por Lizio, Marina, Mukarram, Abdul Kadir, Ohno, Mizuho, Watanabe, Shoko, Itoh, Masayoshi, Hasegawa, Akira, Lassmann, Timo, Severin, Jessica, Harshbarger, Jayson, Abugessaisa, Imad, Kasukawa, Takeya, Hon, Chung Chau, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R.R., Kawaji, Hideya
Publicado 2017

Technical Advance: Transcription factor, promoter, and enhancer utilization in human myeloid cells

por Joshi, Anagha, Pooley, Christopher, Freeman, Tom C., Lennartsson, Andreas, Babina, Magda, Schmidl, Christian, Geijtenbeek, Teunis, Michoel, Tom, Severin, Jessica, Itoh, Masayoshi, Lassmann, Timo, Kawaji, Hideya, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R. R., Rehli, Michael, Hume, David A.
Publicado 2015

Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

por Francescatto, Margherita, Lizio, Marina, Philippens, Ingrid, Pardo, Luba M., Bontrop, Ronald, Sakai, Mizuho, Watanabe, Shoko, Itoh, Masayoshi, Hasegawa, Akira, Lassmann, Timo, Severin, Jessica, Harshbarger, Jayson, Abugessaisa, Imad, Kasukawa, Takeya, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Kawaji, Hideya, Rizzu, Patrizia, Heutink, Peter
Publicado 2017

Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

por Francescatto, Margherita, Lizio, Marina, Philippens, Ingrid, Pardo, Luba M., Bontrop, Ronald, Sakai, Mizuho, Watanabe, Shoko, Itoh, Masayoshi, Hasegawa, Akira, Lassmann, Timo, Severin, Jessica, Harshbarger, Jayson, Abugessaisa, Imad, Kasukawa, Takeya, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Kawaji, Hideya, Rizzu, Patrizia, Heutink, Peter
Publicado 2018

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

por Plessy, Charles, Bertin, Nicolas, Takahashi, Hazuki, Simone, Roberto, Salimullah, Md., Lassmann, Timo, Vitezic, Morana, Severin, Jessica, Olivarius, Signe, Lazarevic, Dejan, Hornig, Nadine, Orlando, Valerio, Bell, Ian, Gao, Hui, Dumais, Jacqueline, Kapranov, Philipp, Wang, Huaien, Davis, Carrie A., Gingeras, Thomas R., Kawai, Jun, Daub, Carsten O., Hayashizaki, Yoshihide, Gustincich, Stefano, Carninci, Piero
Publicado 2010

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

por Lizio, Marina, Harshbarger, Jayson, Abugessaisa, Imad, Noguchi, Shuei, Kondo, Atsushi, Severin, Jessica, Mungall, Chris, Arenillas, David, Mathelier, Anthony, Medvedeva, Yulia A., Lennartsson, Andreas, Drabløs, Finn, Ramilowski, Jordan A., Rackham, Owen, Gough, Julian, Andersson, Robin, Sandelin, Albin, Ienasescu, Hans, Ono, Hiromasa, Bono, Hidemasa, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R.R., Kasukawa, Takeya, Kawaji, Hideya
Publicado 2017