Investigation of improving the pre-training and fine-tuning of BERT model for biomedical relation extraction

por Su, Peng, Vijay-Shanker, K.
Publicado 2022

eGIFT: Mining Gene Information from the Literature

por Tudor, Catalina O, Schmidt, Carl J, Vijay-Shanker, K
Publicado 2010

Using distant supervision to augment manually annotated data for relation extraction

por Su, Peng, Li, Gang, Wu, Cathy, Vijay-Shanker, K.
Publicado 2019

Text mining of CHO bioprocess bibliome: Topic modeling and document classification

por Wang, Qinghua, Olshin, Jonathan, Vijay-Shanker, K., Wu, Cathy H.
Publicado 2023

A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems

por Peng, Yifan, Torii, Manabu, Wu, Cathy H, Vijay-Shanker, K
Publicado 2014

BioC-compatible full-text passage detection for protein–protein interactions using extended dependency graph

por Peng, Yifan, Arighi, Cecilia, Wu, Cathy H., Vijay-Shanker, K.
Publicado 2016

Automatic gene annotation using GO terms from cellular component domain

por Ding, Ruoyao, Qu, Yingying, Wu, Cathy H., Vijay-Shanker, K.
Publicado 2018

Ameliorative Potential of Quercetin Against Paracetamol-induced Oxidative Stress in Mice Blood

por Singh, Sujata, Singh, Shanker K., Kumar, Mritunjay, Chandra, Kalpana, Singh, Rashmi
Publicado 2011

A Brief View on Molecular Diagnosis and Surveillance of West Nile Virus

por Kumar, Pranay, Singh, Shanker K, Singh, Yogranjan R, Jhala, Mayurdhvaj K
Publicado 2010

DiMeX: A Text Mining System for Mutation-Disease Association Extraction

por Mahmood, A. S. M. Ashique, Wu, Tsung-Jung, Mazumder, Raja, Vijay-Shanker, K.
Publicado 2016

emiRIT: a text-mining-based resource for microRNA information

por Roychowdhury, Debarati, Gupta, Samir, Qin, Xihan, Arighi, Cecilia N, Vijay-Shanker, K
Publicado 2021

iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system

por Peng, Yifan, Tudor, Catalina O., Torii, Manabu, Wu, Cathy H., Vijay-Shanker, K.
Publicado 2014

The eFIP system for text mining of protein interaction networks of phosphorylated proteins

por Tudor, Catalina O., Arighi, Cecilia N., Wang, Qinghua, Wu, Cathy H., Vijay-Shanker, K.
Publicado 2012

pGenN, a Gene Normalization Tool for Plant Genes and Proteins in Scientific Literature

por Ding, Ruoyao, Arighi, Cecilia N., Lee, Jung-Youn, Wu, Cathy H., Vijay-Shanker, K.
Publicado 2015

miRTex: A Text Mining System for miRNA-Gene Relation Extraction

por Li, Gang, Ross, Karen E., Arighi, Cecilia N., Peng, Yifan, Wu, Cathy H., Vijay-Shanker, K.
Publicado 2015

eGARD: Extracting associations between genomic anomalies and drug responses from text

por Mahmood, A. S. M. Ashique, Rao, Shruti, McGarvey, Peter, Wu, Cathy, Madhavan, Subha, Vijay-Shanker, K.
Publicado 2017

Developing a biocuration workflow for AgBase, a non-model organism database

por Pillai, Lakshmi, Chouvarine, Philippe, Tudor, Catalina O., Schmidt, Carl J., Vijay-Shanker, K., McCarthy, Fiona M.
Publicado 2012

Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system

por Tudor, Catalina O., Ross, Karen E., Li, Gang, Vijay-Shanker, K., Wu, Cathy H., Arighi, Cecilia N.
Publicado 2015

miRiaD: A Text Mining Tool for Detecting Associations of microRNAs with Diseases

por Gupta, Samir, Ross, Karen E., Tudor, Catalina O., Wu, Cathy H., Schmidt, Carl J., Vijay-Shanker, K.
Publicado 2016

DEXTER: Disease-Expression Relation Extraction from Text

por Gupta, Samir, Dingerdissen, Hayley, Ross, Karen E, Hu, Yu, Wu, Cathy H, Mazumder, Raja, Vijay-Shanker, K
Publicado 2018