Computational detection of abundant long-range nucleotide covariation in Drosophila genomes

por Bindewald, Eckart, Shapiro, Bruce A.
Publicado 2013

Structural polymorphism of the HIV-1 leader region explored by computational methods

por Kasprzak, Wojciech, Bindewald, Eckart, Shapiro, Bruce A.
Publicado 2005

CyloFold: secondary structure prediction including pseudoknots

por Bindewald, Eckart, Kluth, Tanner, Shapiro, Bruce A.
Publicado 2010

Predicting RNA SHAPE scores with deep learning

por Bliss, Noah, Bindewald, Eckart, Shapiro, Bruce A.
Publicado 2020

RNA Toehold Interactions Initiate Conditional Gene Silencing

por Zakrevsky, Paul, Bindewald, Eckart, Shapiro, Bruce A
Publicado 2016

Functionalized non-viral cationic vectors for effective siRNA induced cancer therapy

por Gupta, Kshitij, Puri, Anu, Shapiro, Bruce A.
Publicado 2017

CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments

por Bindewald, Eckart, Schneider, Thomas D., Shapiro, Bruce A.
Publicado 2006

Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores

por Song, Yang, Hua, Lei, Shapiro, Bruce A, Wang, Jason TL
Publicado 2015

RADAR: a web server for RNA data analysis and research

por Khaladkar, Mugdha, Bellofatto, Vivian, Wang, Jason T. L., Tian, Bin, Shapiro, Bruce A.
Publicado 2007

RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign

por Bindewald, Eckart, Hayes, Robert, Yingling, Yaroslava G., Kasprzak, Wojciech, Shapiro, Bruce A.
Publicado 2008

Structural characterization of a new subclass of panicum mosaic virus-like 3′ cap-independent translation enhancer

por Johnson, Philip Z, Kasprzak, Wojciech K, Shapiro, Bruce A, Simon, Anne E
Publicado 2022

A Suite of Therapeutically-Inspired Nucleic Acid Logic Systems for Conditional Generation of Single-Stranded and Double-Stranded Oligonucleotides

por Zakrevsky, Paul, Bindewald, Eckart, Humbertson, Hadley, Viard, Mathias, Dorjsuren, Nomongo, Shapiro, Bruce A.
Publicado 2019

RNA–Protein Interactions Prevent Long RNA Duplex Formation: Implications for the Design of RNA-Based Therapeutics

por Bindewald, Eckart, Dai, Lisheng, Kasprzak, Wojciech K., Kim, Taejin, Gu, Shuo, Shapiro, Bruce A.
Publicado 2018

RNA pseudoknots downstream of the frameshift sites of retroviruses

por Shu-Yun Le, Shapiro, Bruce A., Chen, Jih-H., Nussinov, Ruth, Maizel, Jacob V.
Publicado 1991

Virtual Screening of Hepatitis B Virus Pre-Genomic RNA as a Novel Therapeutic Target

por Olenginski, Lukasz T., Kasprzak, Wojciech K., Attionu, Solomon K., Shapiro, Bruce A., Dayie, Theodore K.
Publicado 2023

Predicting Consensus Structures for RNA Alignments Via Pseudo-Energy Minimization

por Spirollari, Junilda, Wang, Jason T.L., Zhang, Kaizhong, Bellofatto, Vivian, Park, Yongkyu, Shapiro, Bruce A.
Publicado 2009

Inhibition of vemurafenib-resistant melanoma by interference with pre-mRNA splicing

por Salton, Maayan, Kasprzak, Wojciech K., Voss, Ty, Shapiro, Bruce A., Poulikakos, Poulikos I., Misteli, Tom
Publicado 2015

In vitro Assembly of Cubic RNA-Based Scaffolds Designed in silico

por Afonin, Kirill A, Bindewald, Eckart, Yaghoubian, Alan J., Voss, Neil, Jacovetty, Erica, Shapiro, Bruce A., Jaeger, Luc
Publicado 2010

In Silico Design and Enzymatic Synthesis of Functional RNA Nanoparticles

por Afonin, Kirill A., Kasprzak, Wojciech K., Bindewald, Eckart, Kireeva, Maria, Viard, Mathias, Kashlev, Mikhail, Shapiro, Bruce A.
Publicado 2014

Triggering RNAi with multifunctional RNA nanoparticles and their delivery

por Dao, Bich Ngoc, Viard, Mathias, Martins, Angelica N., Kasprzak, Wojciech K., Shapiro, Bruce A., Afonin, Kirill A.
Publicado 2015