Gene Co-occurrence Networks Reflect Bacteriophage Ecology and Evolution

por Shapiro, Jason W., Putonti, Catherine
Publicado 2018

UPΦ phages, a new group of filamentous phages found in several members of Enterobacteriales

por Shapiro, Jason W, Putonti, Catherine
Publicado 2020

Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies

por Shapiro, Jason W., Putonti, Catherine
Publicado 2021

The impact of transmission mode on the evolution of benefits provided by microbial symbionts

por Shapiro, Jason W, Turner, Paul E
Publicado 2014

Evolution of parasitism and mutualism between filamentous phage M13 and Escherichia coli

por Shapiro, Jason W., Williams, Elizabeth S.C.P., Turner, Paul E.
Publicado 2016

Comparative Genomic Study of Lactobacillus jensenii and the Newly Defined Lactobacillus mulieris Species Identifies Species-Specific Functionality

por Putonti, Catherine, Shapiro, Jason W., Ene, Adriana, Tsibere, Oleksandra, Wolfe, Alan J.
Publicado 2020

Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract

por Miller-Ensminger, Taylor, Mormando, Rita, Maskeri, Laura, Shapiro, Jason W., Wolfe, Alan J., Putonti, Catherine
Publicado 2020

Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges

por Bruder, Katherine, Malki, Kema, Cooper, Alexandria, Sible, Emily, Shapiro, Jason W., Watkins, Siobhan C., Putonti, Catherine
Publicado 2016

Checkpoint Blockade–Induced Dermatitis and Colitis Are Dominated by Tissue-Resident Memory T Cells and Th1/Tc1 Cytokines

por Reschke, Robin, Shapiro, Jason W., Yu, Jovian, Rouhani, Sherin J., Olson, Daniel J., Zha, Yuanyuan, Gajewski, Thomas F.
Publicado 2022

Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome

por Malki, Kema, Shapiro, Jason W., Price, Travis K., Hilt, Evann E., Thomas-White, Krystal, Sircar, Trina, Rosenfeld, Amy B., Kuffel, Gina, Zilliox, Michael J., Wolfe, Alan J., Putonti, Catherine
Publicado 2016

Genomic Survey of E. coli From the Bladders of Women With and Without Lower Urinary Tract Symptoms

por Garretto, Andrea, Miller-Ensminger, Taylor, Ene, Adriana, Merchant, Zubia, Shah, Aashaka, Gerodias, Athina, Biancofiori, Anthony, Canchola, Stacey, Canchola, Stephanie, Castillo, Emanuel, Chowdhury, Tasnim, Gandhi, Nikita, Hamilton, Sarah, Hatton, Kyla, Hyder, Syed, Krull, Koty, Lagios, Demetrios, Lam, Thinh, Mitchell, Kennedy, Mortensen, Christine, Murphy, Amber, Richburg, Joseph, Rokas, Meghan, Ryclik, Suzanne, Sulit, Pauline, Szwajnos, Thomas, Widuch, Manuel, Willis, Jessica, Woloszyn, Mary, Brassil, Bridget, Johnson, Genevieve, Mormando, Rita, Maskeri, Laura, Batrich, Mary, Stark, Nicole, Shapiro, Jason W., Montelongo Hernandez, Cesar, Banerjee, Swarnali, Wolfe, Alan J., Putonti, Catherine
Publicado 2020