InterOpt: Improved gene expression quantification in qPCR experiments using weighted aggregation of reference genes

por Salimi, Adel, Rahmani, Saeid, Sharifi-Zarchi, Ali
Publicado 2023

DNA-RNA Hybrid (R-Loop): From a Unified Picture of the Mammalian Telomere to the Genome-Wide Profile

por Rassoulzadegan, Minoo, Sharifi-Zarchi, Ali, Kianmehr, Leila
Publicado 2021

Comparative In Vitro Evaluation of Human Dental Pulp and Follicle Stem Cell Commitment

por Karamzadeh, Razieh, Baghaban Eslaminejad, Mohamadreza, Sharifi-Zarchi, Ali
Publicado 2017

DeePathology: Deep Multi-Task Learning for Inferring Molecular Pathology from Cancer Transcriptome

por Azarkhalili, Behrooz, Saberi, Ali, Chitsaz, Hamidreza, Sharifi-Zarchi, Ali
Publicado 2019

The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency

por Yousefi, Meisam, Marashi, Sayed-Amir, Sharifi-Zarchi, Ali, Taleahmad, Sara
Publicado 2019

The assessment of efficient representation of drug features using deep learning for drug repositioning

por Moridi, Mahroo, Ghadirinia, Marzieh, Sharifi-Zarchi, Ali, Zare-Mirakabad, Fatemeh
Publicado 2019

ARYANA: Aligning Reads by Yet Another Approach

por Gholami, Milad, Arbabi, Aryan, Sharifi-Zarchi, Ali, Chitsaz, Hamidreza, Sadeghi, Mehdi
Publicado 2014

StrongestPath: a Cytoscape application for protein–protein interaction analysis

por Mousavian, Zaynab, Khodabandeh, Mehran, Sharifi-Zarchi, Ali, Nadafian, Alireza, Mahmoudi, Alireza
Publicado 2021

An integrative Bayesian network approach to highlight key drivers in systemic lupus erythematosus

por Maleknia, Samaneh, Salehi, Zahra, Rezaei Tabar, Vahid, Sharifi-Zarchi, Ali, Kavousi, Kaveh
Publicado 2020

Down-Regulation of miR-200c and Up-Regulation of miR-30c Target both Stemness and Metastasis Genes in Breast Cancer

por Rahimi, Mahsa, Sharifi-Zarchi, Ali, Zarghami, Nosratollah, Geranpayeh, Lobat, Ebrahimi, Marzieh, Alizadeh, Effat
Publicado 2020

Genome-Wide Distribution of Nascent Transcripts in Sperm DNA, Products of a Late Wave of General Transcription

por Kianmehr, Leila, Khazali, Homayoun, Rajabi-Maham, Hassan, Sharifi-Zarchi, Ali, Cuzin, François, Rassoulzadegan, Minoo
Publicado 2019

miR-361-5p as a promising qRT-PCR internal control for tumor and normal breast tissues

por Ghanbari, Sogol, Salimi, Adel, Rahmani, Saeid, Nafissi, Nahid, Sharifi-Zarchi, Ali, Mowla, Seyed Javad
Publicado 2021

Natural Biased Coin Encoded in the Genome Determines Cell Strategy

por Dorri, Faezeh, Mahini, Hamid, Sharifi-Zarchi, Ali, Totonchi, Mehdi, Tusserkani, Ruzbeh, Pezeshk, Hamid, Sadeghi, Mehdi
Publicado 2014

An integrated analysis to predict micro‐RNAs targeting both stemness and metastasis in breast cancer stem cells

por Rahimi, Mahsa, Sharifi‐Zarchi, Ali, Firouzi, Javad, Azimi, Mahnaz, Zarghami, Nosratollah, Alizadeh, Effat, Ebrahimi, Marzieh
Publicado 2019

Downregulation of Extracellular Matrix and Cell Adhesion Molecules in Cumulus Cells of Infertile Polycystic Ovary Syndrome Women With and Without Insulin Resistance

por Hassani, Fatemeh, Oryan, Shahrbanoo, Eftekhari-Yazdi, Poopak, Bazrgar, Masood, Moini, Ashraf, Nasiri, Nahid, Sharifi-Zarchi, Ali
Publicado 2019

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks

por Abdolhosseini, Farzad, Azarkhalili, Behrooz, Maazallahi, Abbas, Kamal, Aryan, Motahari, Seyed Abolfazl, Sharifi-Zarchi, Ali, Chitsaz, Hamidreza
Publicado 2019

Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis

por Karimizadeh, Elham, Sharifi-Zarchi, Ali, Nikaein, Hassan, Salehi, Seyedehsaba, Salamatian, Bahar, Elmi, Naser, Gharibdoost, Farhad, Mahmoudi, Mahdi
Publicado 2019

Dysregulation of ribosome-related genes in ankylosing spondylitis: a systems biology approach and experimental method

por Lari, Arezou, Pourbadie, Hamid Gholami, Sharifi-Zarchi, Ali, Akhtari, Maryam, Samimi, Leila Nejatbakhsh, Jamshidi, Ahmadreza, Mahmoudi, Mahdi
Publicado 2021

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase

por Karamzadeh, Razieh, Karimi-Jafari, Mohammad Hossein, Sharifi-Zarchi, Ali, Chitsaz, Hamidreza, Salekdeh, Ghasem Hosseini, Moosavi-Movahedi, Ali Akbar
Publicado 2017

Pan-cancer analysis of microRNA expression profiles highlights microRNAs enriched in normal body cells as effective suppressors of multiple tumor types: A study based on TCGA datab...

por Moradi, Sharif, Kamal, Aryan, Aboulkheyr Es, Hamidreza, Farhadi, Farnoosh, Ebrahimi, Marzieh, Chitsaz, Hamidreza, Sharifi-Zarchi, Ali, Baharvand, Hossein
Publicado 2022