Clinical Whole-Genome Sequencing Assay for Rapid Mycobacterium tuberculosis Complex First-Line Drug Susceptibility Testing and Phylogenetic Relatedness Analysis

por Shaw, Bennett, von Bredow, Benjamin, Tsan, Allison, Garner, Omai, Yang, Shangxin
Publicado 2023

DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing

por Lagerborg, Kim A., Normandin, Erica, Bauer, Matthew R., Adams, Gordon, Figueroa, Katherine, Loreth, Christine, Gladden-Young, Adrianne, Shaw, Bennett, Pearlman, Leah, Shenoy, Erica S., Hooper, David, Pierce, Virginia M., Zachary, Kimon C., Park, Daniel J., MacInnis, Bronwyn L., Lemieux, Jacob E., Sabeti, Pardis C., Reilly, Steven K, Siddle, Katherine J.
Publicado 2021

Intrathecal inflammatory responses in the absence of SARS-CoV-2 nucleic acid in the CSF of COVID-19 hospitalized patients

por Normandin, Erica, Holroyd, Kathryn B., Collens, Sarah I., Shaw, Bennett M., Siddle, Katherine J., Adams, Gordon, Rudy, Melissa, Solomon, Isaac H., Anahtar, Melis N., Lemieux, Jacob E., Trombetta, Bianca A., Kivisakk, Pia, Arnold, Steven E., Rapalino, Otto, Piantadosi, Anne L., Sen, Pritha, Rosenberg, Eric S., Branda, John, Sabeti, Pardis C., Mukerji, Shibani S.
Publicado 2021

Integrated sample inactivation, amplification, and Cas13-based detection of SARS-CoV-2

por Arizti-Sanz, Jon, Freije, Catherine A., Stanton, Alexandra C., Boehm, Chloe K., Petros, Brittany A., Siddiqui, Sameed, Shaw, Bennett M., Adams, Gordon, Kosoko-Thoroddsen, Tinna-Solveig F., Kemball, Molly E., Gross, Robin, Wronka, Loni, Caviness, Katie, Hensley, Lisa E., Bergman, Nicholas H., MacInnis, Bronwyn L., Lemieux, Jacob E., Sabeti, Pardis C., Myhrvold, Cameron
Publicado 2020

Susceptibility-weighted imaging reveals cerebral microvascular injury in severe COVID-19

por Conklin, John, Frosch, Matthew P., Mukerji, Shibani S., Rapalino, Otto, Maher, Mary D., Schaefer, Pamela W., Lev, Michael H., Gonzalez, R.G., Das, Sudeshna, Champion, Samantha N., Magdamo, Colin, Sen, Pritha, Harrold, G. Kyle, Alabsi, Haitham, Normandin, Erica, Shaw, Bennett, Lemieux, Jacob E., Sabeti, Pardis C., Branda, John A., Brown, Emery N., Westover, M. Brandon, Huang, Susie Y., Edlow, Brian L.
Publicado 2021

Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2

por Arizti-Sanz, Jon, Freije, Catherine A., Stanton, Alexandra C., Petros, Brittany A., Boehm, Chloe K., Siddiqui, Sameed, Shaw, Bennett M., Adams, Gordon, Kosoko-Thoroddsen, Tinna-Solveig F., Kemball, Molly E., Uwanibe, Jessica N., Ajogbasile, Fehintola V., Eromon, Philomena E., Gross, Robin, Wronka, Loni, Caviness, Katie, Hensley, Lisa E., Bergman, Nicholas H., MacInnis, Bronwyn L., Happi, Christian T., Lemieux, Jacob E., Sabeti, Pardis C., Myhrvold, Cameron
Publicado 2020

Distinguishing Severe Acute Respiratory Syndrome Coronavirus 2 Persistence and Reinfection: A Retrospective Cohort Study

por Turbett, Sarah E, Tomkins-Tinch, Christopher H, Anahtar, Melis N, Dugdale, Caitlin M, Hyle, Emily P, Shenoy, Erica S, Shaw, Bennett, Egbuonu, Kenechukwu, Bowman, Kathryn A, Zachary, Kimon C, Adams, Gordon C, Hooper, David C, Ryan, Edward T, LaRocque, Regina C, Bassett, Ingrid V, Triant, Virginia A, Siddle, Katherine J, Rosenberg, Eric, Sabeti, Pardis C, Schaffner, Stephen F, MacInnis, Bronwyn L, Lemieux, Jacob E, Charles, Richelle C
Publicado 2022

Determining the Incidence of Asymptomatic SARS-CoV-2 Among Early Recipients of COVID-19 Vaccines (DISCOVER-COVID-19): A Prospective Cohort Study of Healthcare Workers Before, Durin...

por North, Crystal M, Barczak, Amy, Goldstein, Robert H, Healy, Brian C, Finkelstein, Dianne M, Ding, Delaney D, Kim, Andy, Boucau, Julie, Shaw, Bennett, Gilbert, Rebecca F, Vyas, Tammy, Reynolds, Zahra, Siddle, Katherine J, MacInnis, Bronwyn L, Regan, James, Flynn, James P, Choudhary, Manish C, Vyas, Jatin M, Laskowski, Karl, Dighe, Anand S, Lemieux, Jacob E, Li, Jonathan Z, Baden, Lindsey R, Siedner, Mark J, Woolley, Ann E, Sacks, Chana A
Publicado 2021

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: A guide and case study in setting up an emergency-use, laboratory-developed molecular assay

por Anahtar, Melis N., Shaw, Bennett, Slater, Damien, Byrne, Elizabeth, Botti-Lodovico, Yolanda, Adams, Gordon, Schaffner, Stephen, Eversley, Jacqueline, McGrath, Graham, Gogakos, Tasos, Lennerz, Jochen, Desai Marble, Hetal, Ritterhouse, Lauren L., Batten, Julie, Georgantas, N. Zeke, Pellerin, Rebecca, Signorelli, Sylvia, Thierauf, Julia, Kemball, Molly, Happi, Christian, Grant, Donald S., Ndiaye, Daouda, Siddle, Katherine J., Mehta, Samar B., Harris, Jason, Ryan, Edward T., Pierce, Virginia, LaRocque, Regina, Lemieux, Jacob E., Sabeti, Pardis, Rosenberg, Eric, Branda, John, Turbett, Sarah E.
Publicado 2020

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: a guide and case study in setting up an emergency-use, laboratory-developed molecular microbiol...

por Anahtar, Melis N, Shaw, Bennett M, Slater, Damien, Byrne, Elizabeth H, Botti-Lodovico, Yolanda, Adams, Gordon, Schaffner, Stephen F, Eversley, Jacqueline, McGrath, Graham E G, Gogakos, Tasos, Lennerz, Jochen, Marble, Hetal Desai, Ritterhouse, Lauren L, Batten, Julie M, Georgantas, N Zeke, Pellerin, Rebecca, Signorelli, Sylvia, Thierauf, Julia, Kemball, Molly, Happi, Christian, Grant, Donald S, Ndiaye, Daouda, Siddle, Katherine J, Mehta, Samar B, Harris, Jason B, Ryan, Edward T, Pierce, Virginia M, LaRocque, Regina C, Lemieux, Jacob E, Sabeti, Pardis C, Rosenberg, Eric S, Branda, John A, Turbett, Sarah E
Publicado 2021

Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events.

por Lemieux, Jacob E., Siddle, Katherine J., Shaw, Bennett M., Loreth, Christine, Schaffner, Stephen F., Gladden-Young, Adrianne, Adams, Gordon, Fink, Timelia, Tomkins-Tinch, Christopher H., Krasilnikova, Lydia A., DeRuff, Katherine C., Rudy, Melissa, Bauer, Matthew R., Lagerborg, Kim A., Normandin, Erica, Chapman, Sinead B., Reilly, Steven K., Anahtar, Melis N., Lin, Aaron E., Carter, Amber, Myhrvold, Cameron, Kemball, Molly E., Chaluvadi, Sushma, Cusick, Caroline, Flowers, Katelyn, Neumann, Anna, Cerrato, Felecia, Farhat, Maha, Slater, Damien, Harris, Jason B., Branda, John, Hooper, David, Gaeta, Jessie M., Baggett, Travis P., O’Connell, James, Gnirke, Andreas, Lieberman, Tami D., Philippakis, Anthony, Burns, Meagan, Brown, Catherine M., Luban, Jeremy, Ryan, Edward T., Turbett, Sarah E., LaRocque, Regina C., Hanage, William P., Gallagher, Glen R., Madoff, Lawrence C., Smole, Sandra, Pierce, Virginia M., Rosenberg, Eric, Sabeti, Pardis C., Park, Daniel J., Maclnnis, Bronwyn L.
Publicado 2020

Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events

por Lemieux, Jacob E., Siddle, Katherine J., Shaw, Bennett M., Loreth, Christine, Schaffner, Stephen F., Gladden-Young, Adrianne, Adams, Gordon, Fink, Timelia, Tomkins-Tinch, Christopher H., Krasilnikova, Lydia A., DeRuff, Katherine C., Rudy, Melissa, Bauer, Matthew R., Lagerborg, Kim A., Normandin, Erica, Chapman, Sinéad B., Reilly, Steven K., Anahtar, Melis N., Lin, Aaron E., Carter, Amber, Myhrvold, Cameron, Kemball, Molly E., Chaluvadi, Sushma, Cusick, Caroline, Flowers, Katelyn, Neumann, Anna, Cerrato, Felecia, Farhat, Maha, Slater, Damien, Harris, Jason B., Branda, John A., Hooper, David, Gaeta, Jessie M., Baggett, Travis P., O’Connell, James, Gnirke, Andreas, Lieberman, Tami D., Philippakis, Anthony, Burns, Meagan, Brown, Catherine M., Luban, Jeremy, Ryan, Edward T., Turbett, Sarah E., LaRocque, Regina C., Hanage, William P., Gallagher, Glen R., Madoff, Lawrence C., Smole, Sandra, Pierce, Virginia M., Rosenberg, Eric, Sabeti, Pardis C., Park, Daniel J., MacInnis, Bronwyn L.
Publicado 2020

Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants

por Welch, Nicole L., Zhu, Meilin, Hua, Catherine, Weller, Juliane, Mirhashemi, Marzieh Ezzaty, Nguyen, Tien G., Mantena, Sreekar, Bauer, Matthew R., Shaw, Bennett M., Ackerman, Cheri M., Thakku, Sri Gowtham, Tse, Megan W., Kehe, Jared, Uwera, Marie-Martine, Eversley, Jacqueline S., Bielwaski, Derek A., McGrath, Graham, Braidt, Joseph, Johnson, Jeremy, Cerrato, Felecia, Moreno, Gage K., Krasilnikova, Lydia A., Petros, Brittany A., Gionet, Gabrielle L., King, Ewa, Huard, Richard C., Jalbert, Samantha K., Cleary, Michael L., Fitzgerald, Nicholas A., Gabriel, Stacey B., Gallagher, Glen R., Smole, Sandra C., Madoff, Lawrence C., Brown, Catherine M., Keller, Matthew W., Wilson, Malania M., Kirby, Marie K., Barnes, John R., Park, Daniel J., Siddle, Katherine J., Happi, Christian T., Hung, Deborah T., Springer, Michael, MacInnis, Bronwyn L., Lemieux, Jacob E., Rosenberg, Eric, Branda, John A., Blainey, Paul C., Sabeti, Pardis C., Myhrvold, Cameron
Publicado 2022