HIV N-linked glycosylation site analyzer and its further usage in anchored alignment

por Shaw, Timothy I., Zhang, Ming
Publicado 2013

STRAW: Species TRee Analysis Web server

por Shaw, Timothy I., Ruan, Zheng, Glenn, Travis C., Liu, Liang
Publicado 2013

Expression profiling of lymph node cells from deer mice infected with Andes virus

por Schountz, Tony, Shaw, Timothy I, Glenn, Travis C, Feldmann, Heinz, Prescott, Joseph
Publicado 2013

Transcriptome Analysis of a North American Songbird, Melospiza melodia

por Srivastava, Anuj, Winker, Kevin, Shaw, Timothy I., Jones, Kenneth L., Glenn, Travis C.
Publicado 2012

Rapid Microbiome Changes in Freshly Deposited Cow Feces under Field Conditions

por Wong, Kelvin, Shaw, Timothy I., Oladeinde, Adelumola, Glenn, Travis C., Oakley, Brian, Molina, Marirosa
Publicado 2016

Toxicoproteomic Profiling of hPXR Transgenic Mice Treated with Rifampicin and Isoniazid

por Brewer, Christopher Trent, Kodali, Kiran, Wu, Jing, Shaw, Timothy I., Peng, Junmin, Chen, Taosheng
Publicado 2020

Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds

por Wang, Yingfeng, Manzour, Amir, Shareghi, Pooya, Shaw, Timothy I, Li, Ying-Wai, Malmberg, Russell L, Cai, Liming
Publicado 2012

Summarizing internal dynamics boosts differential analysis and functional interpretation of super enhancers

por Liu, Xiang, Zhao, Bo, Shaw, Timothy I, Fridley, Brooke L, Duckett, Derek R, Tan, Aik Choon, Teng, Mingxiang
Publicado 2022

Multi-omics approach to identifying isoform variants as therapeutic targets in cancer patients

por Shaw, Timothy I., Zhao, Bi, Li, Yuxin, Wang, Hong, Wang, Liang, Manley, Brandon, Stewart, Paul A., Karolak, Aleksandra
Publicado 2022

Transcriptome Sequencing and Annotation for the Jamaican Fruit Bat (Artibeus jamaicensis)

por Shaw, Timothy I., Srivastava, Anuj, Chou, Wen-Chi, Liu, Liang, Hawkinson, Ann, Glenn, Travis C., Adams, Rick, Schountz, Tony
Publicado 2012

JUMPm: A Tool for Large-Scale Identification of Metabolites in Untargeted Metabolomics

por Wang, Xusheng, Cho, Ji-Hoon, Poudel, Suresh, Li, Yuxin, Jones, Drew R., Shaw, Timothy I., Tan, Haiyan, Xie, Boer, Peng, Junmin
Publicado 2020

DRPPM-EASY: A Web-Based Framework for Integrative Analysis of Multi-Omics Cancer Datasets

por Obermayer, Alyssa, Dong, Li, Hu, Qianqian, Golden, Michael, Noble, Jerald D., Rodriguez, Paulo, Robinson, Timothy J., Teng, Mingxiang, Tan, Aik-Choon, Shaw, Timothy I.
Publicado 2022

Metabolomic and transcriptomic analysis reveals endogenous substrates and metabolic adaptation in rats lacking Abcg2 and Abcb1a transporters

por Ganguly, Samit, Finkelstein, David, Shaw, Timothy I., Michalek, Ryan D., Zorn, Kimberly M., Ekins, Sean, Yasuda, Kazuto, Fukuda, Yu, Schuetz, John D., Mukherjee, Kamalika, Schuetz, Erin G.
Publicado 2021

A Key Role for the Ubiquitin Ligase UBR4 in Myofiber Hypertrophy in Drosophila and Mice

por Hunt, Liam C., Stover, Jared, Haugen, Benard, Shaw, Timothy I., Li, Yuxin, Pagala, Vishwajeeth R., Finkelstein, David, Barton, Elisabeth R., Fan, Yiping, Labelle, Myriam, Peng, Junmin, Demontis, Fabio
Publicado 2019

The landscape of coding RNA editing events in pediatric cancer

por Wen, Ji, Rusch, Michael, Brady, Samuel W., Shao, Ying, Edmonson, Michael N., Shaw, Timothy I., Powers, Brent B., Tian, Liqing, Easton, John, Mullighan, Charles G., Gruber, Tanja, Ellison, David, Zhang, Jinghui
Publicado 2021

PATH-SURVEYOR: pathway level survival enquiry for immuno-oncology and drug repurposing

por Obermayer, Alyssa N., Chang, Darwin, Nobles, Gabrielle, Teng, Mingxiang, Tan, Aik-Choon, Wang, Xuefeng, Chen, Y. Ann, Eschrich, Steven, Rodriguez, Paulo C., Grass, G. Daniel, Meshinchi, Soheil, Tarhini, Ahmad, Chen, Dung-tsa, Shaw, Timothy I.
Publicado 2023

Long Noncoding RNA Expression Independently Predicts Outcome in Pediatric Acute Myeloid Leukemia

por Farrar, Jason E., Smith, Jenny L., Othus, Megan, Huang, Benjamin J., Wang, Yi-Cheng, Ries, Rhonda, Hylkema, Tiffany, Pogosova-Agadjanyan, Era L., Challa, Sneha, Leonti, Amanda, Shaw, Timothy I., Triche, Timothy J., Gamis, Alan S., Aplenc, Richard, Kolb, E. Anders, Ma, Xiaotu, Stirewalt, Derek L., Alonzo, Todd A., Meshinchi, Soheil
Publicado 2023

Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genes

por Wang, Hong, Diaz, Alexander K., Shaw, Timothy I., Li, Yuxin, Niu, Mingming, Cho, Ji-Hoon, Paugh, Barbara S., Zhang, Yang, Sifford, Jeffrey, Bai, Bing, Wu, Zhiping, Tan, Haiyan, Zhou, Suiping, Hover, Laura D., Tillman, Heather S., Shirinifard, Abbas, Thiagarajan, Suresh, Sablauer, Andras, Pagala, Vishwajeeth, High, Anthony A., Wang, Xusheng, Li, Chunliang, Baker, Suzanne J., Peng, Junmin
Publicado 2019

Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL)

por Shaw, Timothy I., Dong, Li, Tian, Liqing, Qian, Chenxi, Liu, Yu, Ju, Bensheng, High, Anthony, Kavdia, Kanisha, Pagala, Vishwajeeth R., Shaner, Bridget, Pei, Deqing, Easton, John, Janke, Laura J., Porter, Shaina N., Ma, Xiaotu, Cheng, Cheng, Pruett-Miller, Shondra M., Choi, John, Yu, Jiyang, Peng, Junmin, Gu, Wei, Look, A. Thomas, Downing, James R., Zhang, Jinghui
Publicado 2021

CBFB-MYH11 fusion transcripts distinguish acute myeloid leukemias with distinct molecular landscapes and outcomes

por Huang, Benjamin J., Smith, Jenny L., Wang, Yi-Cheng, Taghizadeh, Kassra, Leonti, Amanda R., Ries, Rhonda E., Liu, Yanling, Kolekar, Pandurang, Tarlock, Katherine, Gerbing, Robert, Crowgey, Erin, Furlan, Scott N., Shaw, Timothy I., Hagiwara, Kohei, Wei, Lisa, Cooper, Todd M., Gamis, Alan S., Aplenc, Richard, Kolb, E. Anders, Farrar, Jason E., Triche, Timothy, Alonzo, Todd A., Ma, Xiaotu, Meshinchi, Soheil
Publicado 2021