Diversity, multifaceted evolution, and facultative saprotrophism in the European Batrachochytrium salamandrivorans epidemic

por Kelly, Moira, Pasmans, Frank, Muñoz, Jose F., Shea, Terrance P., Carranza, Salvador, Cuomo, Christina A., Martel, An
Publicado 2021

Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species

por Voorhies, Mark, Cohen, Shirli, Shea, Terrance P., Petrus, Semar, Muñoz, José F., Poplawski, Shane, Goldman, William E., Michael, Todd P., Cuomo, Christina A., Sil, Anita, Beyhan, Sinem
Publicado 2022

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

por MacCallum, Iain, Przybylski, Dariusz, Gnerre, Sante, Burton, Joshua, Shlyakhter, Ilya, Gnirke, Andreas, Malek, Joel, McKernan, Kevin, Ranade, Swati, Shea, Terrance P, Williams, Louise, Young, Sarah, Nusbaum, Chad, Jaffe, David B
Publicado 2009

Paired-end sequencing of Fosmid libraries by Illumina

por Williams, Louise J.S., Tabbaa, Diana G., Li, Na, Berlin, Aaron M., Shea, Terrance P., MacCallum, Iain, Lawrence, Michael S., Drier, Yotam, Getz, Gad, Young, Sarah K., Jaffe, David B., Nusbaum, Chad, Gnirke, Andreas
Publicado 2012

Finished bacterial genomes from shotgun sequence data

por Ribeiro, Filipe J., Przybylski, Dariusz, Yin, Shuangye, Sharpe, Ted, Gnerre, Sante, Abouelleil, Amr, Berlin, Aaron M., Montmayeur, Anna, Shea, Terrance P., Walker, Bruce J., Young, Sarah K., Russ, Carsten, Nusbaum, Chad, MacCallum, Iain, Jaffe, David B.
Publicado 2012

Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance

por Desjardins, Christopher A., Cohen, Keira A., Munsamy, Vanisha, Abeel, Thomas, Maharaj, Kashmeel, Walker, Bruce J., Shea, Terrance P., Almeida, Deepak V., Manson, Abigail L., Salazar, Alex, Padayatchi, Nesri, O’Donnell, Max R., Mlisana, Koleka P., Wortman, Jennifer, Birren, Bruce W., Grosset, Jacques, Earl, Ashlee M., Pym, Alexander S.
Publicado 2016

Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance

por Salamzade, Rauf, Manson, Abigail L., Walker, Bruce J., Brennan-Krohn, Thea, Worby, Colin J., Ma, Peijun, He, Lorrie L., Shea, Terrance P., Qu, James, Chapman, Sinéad B., Howe, Whitney, Young, Sarah K., Wurster, Jenna I., Delaney, Mary L., Kanjilal, Sanjat, Onderdonk, Andrew B., Bittencourt, Cassiana E., Gussin, Gabrielle M., Kim, Diane, Peterson, Ellena M., Ferraro, Mary Jane, Hooper, David C., Shenoy, Erica S., Cuomo, Christina A., Cosimi, Lisa A., Huang, Susan S., Kirby, James E., Pierce, Virginia M., Bhattacharyya, Roby P., Earl, Ashlee M.
Publicado 2022

Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal

por Cohen, Keira A., Abeel, Thomas, Manson McGuire, Abigail, Desjardins, Christopher A., Munsamy, Vanisha, Shea, Terrance P., Walker, Bruce J., Bantubani, Nonkqubela, Almeida, Deepak V., Alvarado, Lucia, Chapman, Sinéad B., Mvelase, Nomonde R., Duffy, Eamon Y., Fitzgerald, Michael G., Govender, Pamla, Gujja, Sharvari, Hamilton, Susanna, Howarth, Clinton, Larimer, Jeffrey D., Maharaj, Kashmeel, Pearson, Matthew D., Priest, Margaret E., Zeng, Qiandong, Padayatchi, Nesri, Grosset, Jacques, Young, Sarah K., Wortman, Jennifer, Mlisana, Koleka P., O'Donnell, Max R., Birren, Bruce W., Bishai, William R., Pym, Alexander S., Earl, Ashlee M.
Publicado 2015

Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection

por Henn, Matthew R., Boutwell, Christian L., Charlebois, Patrick, Lennon, Niall J., Power, Karen A., Macalalad, Alexander R., Berlin, Aaron M., Malboeuf, Christine M., Ryan, Elizabeth M., Gnerre, Sante, Zody, Michael C., Erlich, Rachel L., Green, Lisa M., Berical, Andrew, Wang, Yaoyu, Casali, Monica, Streeck, Hendrik, Bloom, Allyson K., Dudek, Tim, Tully, Damien, Newman, Ruchi, Axten, Karen L., Gladden, Adrianne D., Battis, Laura, Kemper, Michael, Zeng, Qiandong, Shea, Terrance P., Gujja, Sharvari, Zedlack, Carmen, Gasser, Olivier, Brander, Christian, Hess, Christoph, Günthard, Huldrych F., Brumme, Zabrina L., Brumme, Chanson J., Bazner, Suzane, Rychert, Jenna, Tinsley, Jake P., Mayer, Ken H., Rosenberg, Eric, Pereyra, Florencia, Levin, Joshua Z., Young, Sarah K., Jessen, Heiko, Altfeld, Marcus, Birren, Bruce W., Walker, Bruce D., Allen, Todd M.
Publicado 2012