Programmable DNA looping using engineered bivalent dCas9 complexes

por Hao, Nan, Shearwin, Keith E., Dodd, Ian B.
Publicado 2017

Efficient chromosomal-scale DNA looping in Escherichia coli using multiple DNA-looping elements

por Hao, Nan, Sneppen, Kim, Shearwin, Keith E., Dodd, Ian B.
Publicado 2017

When push comes to shove - RNA polymerase and DNA-bound protein roadblocks

por Hao, Nan, Donnelly, Alana J., Dodd, Ian B., Shearwin, Keith E.
Publicado 2023

Directing traffic on DNA—How transcription factors relieve or induce transcriptional interference

por Hao, Nan, Palmer, Adam C., Dodd, Ian B., Shearwin, Keith E.
Publicado 2017

The loopometer: a quantitative in vivo assay for DNA-looping proteins

por Hao, Nan, Sullivan, Adrienne E, Shearwin, Keith E, Dodd, Ian B
Publicado 2021

A quantitative binding model for the Apl protein, the dual purpose recombination-directionality factor and lysis-lysogeny regulator of bacteriophage 186

por Cutts, Erin E, Barry Egan, J, Dodd, Ian B, Shearwin, Keith E
Publicado 2020

Analysis of Infection Time Courses Shows CII Levels Determine the Frequency of Lysogeny in Phage 186

por Hao, Nan, Agnew, Dylan, Krishna, Sandeep, Dodd, Ian B., Shearwin, Keith E.
Publicado 2021

Functional Alignment of Regulatory Networks: A Study of Temperate Phages

por Trusina, Ala, Sneppen, Kim, Dodd, Ian B, Shearwin, Keith E, Egan, J. Barry
Publicado 2005

Single molecule analysis of DNA wrapping and looping by a circular 14mer wheel of the bacteriophage 186 CI repressor

por Wang, Haowei, Dodd, Ian B., Dunlap, David D., Shearwin, Keith E., Finzi, Laura
Publicado 2013

RNA polymerase pausing at a protein roadblock can enhance transcriptional interference by promoter occlusion

por Hao, Nan, Crooks, Michael T., Palmer, Adam C., Dodd, Ian B., Shearwin, Keith E.
Publicado 2019

Identification of residues in the N-terminal PAS domains important for dimerization of Arnt and AhR

por Hao, Nan, Whitelaw, Murray L., Shearwin, Keith E., Dodd, Ian B., Chapman-Smith, Anne
Publicado 2011

The role of repressor kinetics in relief of transcriptional interference between convergent promoters

por Hao, Nan, Palmer, Adam C., Ahlgren-Berg, Alexandra, Shearwin, Keith E., Dodd, Ian B.
Publicado 2016

Road rules for traffic on DNA—systematic analysis of transcriptional roadblocking in vivo

por Hao, Nan, Krishna, Sandeep, Ahlgren-Berg, Alexandra, Cutts, Erin E., Shearwin, Keith E., Dodd, Ian B.
Publicado 2014

Instability of CII is needed for efficient switching between lytic and lysogenic development in bacteriophage 186

por Murchland, Iain M, Ahlgren-Berg, Alexandra, Pietsch, Julian M J, Isabel, Alejandra, Dodd, Ian B, Shearwin, Keith E
Publicado 2020

Native mass spectrometry identifies an alternative DNA-binding pathway for BirA from Staphylococcus aureus

por Satiaputra, Jiulia, Sternicki, Louise M., Hayes, Andrew J., Pukala, Tara L., Booker, Grant W., Shearwin, Keith E., Polyak, Steven W.
Publicado 2019

Advanced Resistance Studies Identify Two Discrete Mechanisms in Staphylococcus aureus to Overcome Antibacterial Compounds that Target Biotin Protein Ligase

por Hayes, Andrew J., Satiaputra, Jiulia, Sternicki, Louise M., Paparella, Ashleigh S., Feng, Zikai, Lee, Kwang J., Blanco-Rodriguez, Beatriz, Tieu, William, Eijkelkamp, Bart A., Shearwin, Keith E., Pukala, Tara L., Abell, Andrew D., Booker, Grant W., Polyak, Steven W.
Publicado 2020