FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing

por Shen, Ronglai, Seshan, Venkatraman E.
Publicado 2016

Predicting Cancer Risk from Germline Whole-exome Sequencing Data Using a Novel Context-based Variant Aggregation Approach

por Guan, Zoe, Begg, Colin B., Shen, Ronglai
Publicado 2023

Pathway analysis reveals functional convergence of gene expression profiles in breast cancer

por Shen, Ronglai, Chinnaiyan, Arul M, Ghosh, Debashis
Publicado 2008

Prognostic meta-signature of breast cancer developed by two-stage mixture modeling of microarray data

por Shen, Ronglai, Ghosh, Debashis, Chinnaiyan, Arul M
Publicado 2004

A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments

por Choi, Hyungwon, Shen, Ronglai, Chinnaiyan, Arul M, Ghosh, Debashis
Publicado 2007

Using somatic variant richness to mine signals from rare variants in the cancer genome

por Chakraborty, Saptarshi, Arora, Arshi, Begg, Colin B., Shen, Ronglai
Publicado 2019

Pan-cancer identification of clinically relevant genomic subtypes using outcome-weighted integrative clustering

por Arora, Arshi, Olshen, Adam B., Seshan, Venkatraman E., Shen, Ronglai
Publicado 2020

Bayesian network-driven clustering analysis with feature selection for high-dimensional multi-modal molecular data

por Zhao, Yize, Chang, Changgee, Hannum, Margaret, Lee, Jasme, Shen, Ronglai
Publicado 2021

Mining mutation contexts across the cancer genome to map tumor site of origin

por Chakraborty, Saptarshi, Martin, Axel, Guan, Zoe, Begg, Colin B., Shen, Ronglai
Publicado 2021

Time to Recurrence and Survival in Serous Ovarian Tumors Predicted from Integrated Genomic Profiles

por Mankoo, Parminder K., Shen, Ronglai, Schultz, Nikolaus, Levine, Douglas A., Sander, Chris
Publicado 2011

Pan-cancer analysis of pathway-based gene expression pattern at the individual level reveals biomarkers of clinical prognosis

por Su, Kenong, Yu, Qi, Shen, Ronglai, Sun, Shi-Yong, Moreno, Carlos S., Li, Xiaoxian, Qin, Zhaohui S.
Publicado 2021

Uncovering the hidden structure of dynamic T cell composition in peripheral blood during cancer immunotherapy: a topic modeling approach

por Peng, Xiyu, Lee, Jasme, Adamow, Matthew, Maher, Colleen, Postow, Michael A., Callahan, Margaret K., Panageas, Katherine S., Shen, Ronglai
Publicado 2023

A topic modeling approach reveals the dynamic T cell composition of peripheral blood during cancer immunotherapy

por Peng, Xiyu, Lee, Jasme, Adamow, Matthew, Maher, Colleen, Postow, Michael A., Callahan, Margaret K., Panageas, Katherine S., Shen, Ronglai
Publicado 2023

Integrative Subtype Discovery in Glioblastoma Using iCluster

por Shen, Ronglai, Mo, Qianxing, Schultz, Nikolaus, Seshan, Venkatraman E., Olshen, Adam B., Huse, Jason, Ladanyi, Marc, Sander, Chris
Publicado 2012

Basket Trials in Oncology: A Trade-Off Between Complexity and Efficiency

por Cunanan, Kristen M., Gonen, Mithat, Shen, Ronglai, Hyman, David M., Riely, Gregory J., Begg, Colin B., Iasonos, Alexia
Publicado 2017

Accounting for Delayed Entry in Analyses of Overall Survival in Clinico-Genomic Databases

por Backenroth, Daniel, Snider, Jeremy, Shen, Ronglai, Seshan, Venkatraman, Castellanos, Emily, McCusker, Margaret, Feuchtbaum, Dana, Gönen, Mithat, Sarkar, Somnath
Publicado 2022

Internet-based profiler system as integrative framework to support translational research

por Kim, Robert, Demichelis, Francesca, Tang, Jeffery, Riva, Alberto, Shen, Ronglai, Gibbs, Doug F, Mahavishno, Vasudeva, Chinnaiyan, Arul M, Rubin, Mark A
Publicado 2005

Pan-cancer analysis of bi-allelic alterations in homologous recombination DNA repair genes

por Riaz, Nadeem, Blecua, Pedro, Lim, Raymond S., Shen, Ronglai, Higginson, Daniel S., Weinhold, Nils, Norton, Larry, Weigelt, Britta, Powell, Simon N., Reis-Filho, Jorge S.
Publicado 2017

Integrating Clinical and Multiple Omics Data for Prognostic Assessment across Human Cancers

por Zhu, Bin, Song, Nan, Shen, Ronglai, Arora, Arshi, Machiela, Mitchell J., Song, Lei, Landi, Maria Teresa, Ghosh, Debashis, Chatterjee, Nilanjan, Baladandayuthapani, Veera, Zhao, Hongyu
Publicado 2017

Benchmarking mutation effect prediction algorithms using functionally validated cancer-related missense mutations

por Martelotto, Luciano G, Ng, Charlotte KY, De Filippo, Maria R, Zhang, Yan, Piscuoglio, Salvatore, Lim, Raymond S, Shen, Ronglai, Norton, Larry, Reis-Filho, Jorge S, Weigelt, Britta
Publicado 2014