Template-based prediction of protein structure with deep learning

por Zhang, Haicang, Shen, Yufeng
Publicado 2020

Accurate in silico confirmation of rare copy number variant calls from exome sequencing data using transfer learning

por Tan, Renjie, Shen, Yufeng
Publicado 2022

VBASS enables integration of single cell gene expression data in Bayesian association analysis of rare variants

por Zhong, Guojie, Choi, Yoolim A., Shen, Yufeng
Publicado 2023

A Hidden Markov Model for Copy Number Variant prediction from whole genome resequencing data

por Shen, Yufeng, Gu, Yiwei, Pe’er, Itsik
Publicado 2011

Estimating heritability of drug-induced liver injury from common variants and implications for future study designs

por Overby, Casey Lynnette, Hripcsak, George, Shen, Yufeng
Publicado 2014

Contrasting Determinants of Mutation Rates in Germline and Soma

por Chen, Chen, Qi, Hongjian, Shen, Yufeng, Pickrell, Joseph, Przeworski, Molly
Publicado 2017

Comparing Platforms for C. elegans Mutant Identification Using High-Throughput Whole-Genome Sequencing

por Shen, Yufeng, Sarin, Sumeet, Liu, Ye, Hobert, Oliver, Pe'er, Itsik
Publicado 2008

RNA sequencing from human neutrophils reveals distinct transcriptional differences associated with chronic inflammatory states

por Jiang, Kaiyu, Sun, Xiaoyun, Chen, Yanmin, Shen, Yufeng, Jarvis, James N.
Publicado 2015

SeqMule: automated pipeline for analysis of human exome/genome sequencing data

por Guo, Yunfei, Ding, Xiaolei, Shen, Yufeng, Lyon, Gholson J., Wang, Kai
Publicado 2015

Rare variant phasing and haplotypic expression from RNA sequencing with phASER

por Castel, Stephane E., Mohammadi, Pejman, Chung, Wendy K., Shen, Yufeng, Lappalainen, Tuuli
Publicado 2016

Distinct epigenomic patterns are associated with haploinsufficiency and predict risk genes of developmental disorders

por Han, Xinwei, Chen, Siying, Flynn, Elise, Wu, Shuang, Wintner, Dana, Shen, Yufeng
Publicado 2018

A pan-cancer analysis of driver gene mutations, DNA methylation and gene expressions reveals that chromatin remodeling is a major mechanism inducing global changes in cancer epigen...

por Youn, Ahrim, Kim, Kyung In, Rabadan, Raul, Tycko, Benjamin, Shen, Yufeng, Wang, Shuang
Publicado 2018

A high-throughput percentage-of-binding strategy to measure binding energies in DNA–protein interactions: application to genome-scale site discovery

por Wang, Xiaohu, Gao, Haichun, Shen, Yufeng, Weinstock, George M., Zhou, Jizhong, Palzkill, Timothy
Publicado 2008

Characterizing Immunoglobulin Repertoire from Whole Blood by a Personal Genome Sequencer

por Gao, Fan, Lin, Edwin, Feng, Yaping, Mack, William J., Shen, Yufeng, Wang, Kai
Publicado 2013

Disability-adjusted life years and the trends of the burden of colorectal cancer: a population-based study in Shanghai, China during 2002 to 2016

por Zhong, Wei, Chen, Liping, Li, Xiaopan, Chen, Yichen, Zhang, Yao, Guo, Canjie, Shen, Yufeng, Chen, Huimin
Publicado 2022

ABC Transporters and the Proteasome Complex Are Implicated in Susceptibility to Stevens–Johnson Syndrome and Toxic Epidermal Necrolysis across Multiple Drugs

por Nicoletti, Paola, Bansal, Mukesh, Lefebvre, Celine, Guarnieri, Paolo, Shen, Yufeng, Pe’er, Itsik, Califano, Andrea, Floratos, Aris
Publicado 2015

Single cell RNA-Seq reveals pre-cDCs fate determined by transcription factor combinatorial dose

por Ma, Wenji, Lee, Jaeyop, Backenroth, Daniel, Zhou, Yu Jerry, Bush, Erin, Sims, Peter, Liu, Kang, Shen, Yufeng
Publicado 2019

Tumor-associated T cell receptor repertoires in low- and high-grade gliomas

por Sims, Jennifer S, Grinshpun, Boris, Amendolara, Benjamin I, Shen, Yufeng, Canoll, Peter D, Sims, Peter A, Bruce, Jeffrey N
Publicado 2013

TCR repertoire divergence reflects micro-environmental immune phenotypes in glioma

por Sims, Jennifer, Grinshpun, Boris, Feng, Yaping, Neira, Justin, Samanamud, Jorge, Canoll, Peter, Sims, Peter, Shen, Yufeng, Bruce, Jeffrey
Publicado 2014

MVP predicts the pathogenicity of missense variants by deep learning

por Qi, Hongjian, Zhang, Haicang, Zhao, Yige, Chen, Chen, Long, John J., Chung, Wendy K., Guan, Yongtao, Shen, Yufeng
Publicado 2021