Benchmarking natural-language parsers for biological applications using dependency graphs

por Clegg, Andrew B, Shepherd, Adrian J
Publicado 2007

An analysis of B-cell epitope discontinuity

por Sivalingam, Ganesh N., Shepherd, Adrian J.
Publicado 2012

Utilities for High-Throughput Analysis of B-Cell Clonal Lineages

por Lees, William D., Shepherd, Adrian J.
Publicado 2015

A realistic assessment of methods for extracting gene/protein interactions from free text

por Kabiljo, Renata, Clegg, Andrew B, Shepherd, Adrian J
Publicado 2009

An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs

por Garcia-Alcalde, Fernando, Blanco, Armando, Shepherd, Adrian J
Publicado 2010

Towards a lightweight generic computational grid framework for biological research

por Halling-Brown, Mark D, Moss, David S, Shepherd, Adrian J
Publicado 2008

A text-mining system for extracting metabolic reactions from full-text articles

por Czarnecki, Jan, Nobeli, Irene, Smith, Adrian M, Shepherd, Adrian J
Publicado 2012

Investigating Substitutions in Antibody–Antigen Complexes Using Molecular Dynamics: A Case Study with Broad-spectrum, Influenza A Antibodies

por Lees, William D., Stejskal, Lenka, Moss, David S., Shepherd, Adrian J.
Publicado 2017

Mechanistic diversity in MHC class I antigen recognition

por Barbosa, Camila R. R., Barton, Justin, Shepherd, Adrian J., Mishto, Michele
Publicado 2021

Missed, Not Missing: Phylogenomic Evidence for the Existence of Avian FoxP3

por Denyer, Michael P., Pinheiro, Dammy Y., Garden, Oliver A., Shepherd, Adrian J.
Publicado 2016

Factor VIII cross-matches to the human proteome reduce the predicted inhibitor risk in missense mutation hemophilia A

por Hart, Daniel P., Uzun, Nazmiye, Skelton, Stuart, Kakoschke, Alison, Househam, Jacob, Moss, David S., Shepherd, Adrian J.
Publicado 2019

Flexibility and intrinsic disorder are conserved features of hepatitis C virus E2 glycoprotein

por Stejskal, Lenka, Lees, William D., Moss, David S., Palor, Machaela, Bingham, Richard J., Shepherd, Adrian J., Grove, Joe
Publicado 2020

VIDA: a virus database system for the organization of animal virus genome open reading frames

por Albà, M. Mar, Lee, David, Pearl, Frances M. G., Shepherd, Adrian J., Martin, Nigel, Orengo, Christine A., Kellam, Paul
Publicado 2001

VDJbase: an adaptive immune receptor genotype and haplotype database

por Omer, Aviv, Shemesh, Or, Peres, Ayelet, Polak, Pazit, Shepherd, Adrian J, Watson, Corey T, Boyd, Scott D, Collins, Andrew M, Lees, William, Yaari, Gur
Publicado 2020

OGRDB: a reference database of inferred immune receptor genes

por Lees, William, Busse, Christian E, Corcoran, Martin, Ohlin, Mats, Scheepers, Cathrine, Matsen, Frederick A, Yaari, Gur, Watson, Corey T, Collins, Andrew, Shepherd, Adrian J
Publicado 2020

sumrep: A Summary Statistic Framework for Immune Receptor Repertoire Comparison and Model Validation

por Olson, Branden J., Moghimi, Pejvak, Schramm, Chaim A., Obraztsova, Anna, Ralph, Duncan, Vander Heiden, Jason A., Shugay, Mikhail, Shepherd, Adrian J., Lees, William, Matsen, Frederick A.
Publicado 2019

Cholesterol sensing by CD81 is important for hepatitis C virus entry

por Palor, Machaela, Stejskal, Lenka, Mandal, Piya, Lenman, Annasara, Alberione, María Pía, Kirui, Jared, Moeller, Rebecca, Ebner, Stefan, Meissner, Felix, Gerold, Gisa, Shepherd, Adrian J., Grove, Joe
Publicado 2020

Characterization of the MurT/GatD complex in Mycobacterium tuberculosis towards validating a novel anti-tubercular drug target

por Maitra, Arundhati, Nukala, Syamasundari, Dickman, Rachael, Martin, Liam T, Munshi, Tulika, Gupta, Antima, Shepherd, Adrian J, Arnvig, Kristine B, Tabor, Alethea B, Keep, Nicholas H, Bhakta, Sanjib
Publicado 2021

An entropic safety catch controls hepatitis C virus entry and antibody resistance

por Stejskal, Lenka, Kalemera, Mphatso D, Lewis, Charlotte B, Palor, Machaela, Walker, Lucas, Daviter, Tina, Lees, William D, Moss, David S, Kremyda-Vlachou, Myrto, Kozlakidis, Zisis, Gallo, Giulia, Bailey, Dalan, Rosenberg, William, Illingworth, Christopher JR, Shepherd, Adrian J, Grove, Joe
Publicado 2022

Evolutionary remodelling of N‐terminal domain loops fine‐tunes SARS‐CoV‐2 spike

por Cantoni, Diego, Murray, Matthew J, Kalemera, Mphatso D, Dicken, Samuel J, Stejskal, Lenka, Brown, Georgina, Lytras, Spyros, Coey, Jonathon D, McKenna, James, Bridgett, Stephen, Simpson, David, Fairley, Derek, Thorne, Lucy G, Reuschl, Ann‐Kathrin, Forrest, Calum, Ganeshalingham, Maaroothen, Muir, Luke, Palor, Machaela, Jarvis, Lisa, Willett, Brian, Power, Ultan F, McCoy, Laura E, Jolly, Clare, Towers, Greg J, Doores, Katie J, Robertson, David L, Shepherd, Adrian J, Reeves, Matthew B, Bamford, Connor G G, Grove, Joe
Publicado 2022