Instability of Plastid DNA in the Nuclear Genome

por Sheppard, Anna E., Timmis, Jeremy N.
Publicado 2009

Plassembler: an automated bacterial plasmid assembly tool

por Bouras, George, Sheppard, Anna E, Mallawaarachchi, Vijini, Vreugde, Sarah
Publicado 2023

Complete Genome Sequence of Bacillus thuringiensis Strain 407 Cry-

por Sheppard, Anna E., Poehlein, Anja, Rosenstiel, Philip, Liesegang, Heiko, Schulenburg, Hinrich
Publicado 2013

Complete Genome sequence of the nematicidal Bacillus thuringiensis MYBT18246

por Hollensteiner, Jacqueline, Poehlein, Anja, Spröer, Cathrin, Bunk, Boyke, Sheppard, Anna E., Rosentstiel, Philip, Schulenburg, Hinrich, Liesegang, Heiko
Publicado 2017

TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

por Sheppard, Anna E., Stoesser, Nicole, German-Mesner, Ian, Vegesana, Kasi, Sarah Walker, A., Crook, Derrick W., Mathers, Amy J.
Publicado 2018

Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae

por David, Sophia, Cohen, Victoria, Reuter, Sandra, Sheppard, Anna E., Giani, Tommaso, Parkhill, Julian, Rossolini, Gian Maria, Feil, Edward J., Grundmann, Hajo, Aanensen, David M.
Publicado 2020

Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193

por Sheppard, Anna E., Stoesser, Nicole, Sebra, Robert, Kasarskis, Andrew, Deikus, Gintaras, Anson, Luke, Walker, A. Sarah, Peto, Tim E., Crook, Derrick W., Mathers, Amy J.
Publicado 2016

A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database

por Orlek, Alex, Phan, Hang, Sheppard, Anna E., Doumith, Michel, Ellington, Matthew, Peto, Tim, Crook, Derrick, Walker, A. Sarah, Woodford, Neil, Anjum, Muna F., Stoesser, Nicole
Publicado 2017

Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids

por Orlek, Alex, Phan, Hang, Sheppard, Anna E., Doumith, Michel, Ellington, Matthew, Peto, Tim, Crook, Derrick, Walker, A. Sarah, Woodford, Neil, Anjum, Muna F., Stoesser, Nicole
Publicado 2017

First Report of bla(IMP-14) on a Plasmid Harboring Multiple Drug Resistance Genes in Escherichia coli Sequence Type 131

por Stoesser, Nicole, Sheppard, Anna E., Peirano, Gisele, Sebra, Robert P., Lynch, Tarah, Anson, Luke W., Kasarskis, Andrew, Motyl, Mary R., Crook, Derrick W., Pitout, Johann D.
Publicado 2016

Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology

por Orlek, Alex, Stoesser, Nicole, Anjum, Muna F., Doumith, Michel, Ellington, Matthew J., Peto, Tim, Crook, Derrick, Woodford, Neil, Walker, A. Sarah, Phan, Hang, Sheppard, Anna E.
Publicado 2017

Capsular Typing Method for Streptococcus agalactiae Using Whole-Genome Sequence Data

por Sheppard, Anna E., Vaughan, Alison, Jones, Nicola, Turner, Paul, Turner, Claudia, Efstratiou, Androulla, Patel, Darshana, Walker, A. Sarah, Berkley, James A., Crook, Derrick W., Seale, Anna C.
Publicado 2016

Klebsiella quasipneumoniae Provides a Window into Carbapenemase Gene Transfer, Plasmid Rearrangements, and Patient Interactions with the Hospital Environment

por Mathers, Amy J., Crook, Derrick, Vaughan, Alison, Barry, Katie E., Vegesana, Kasi, Stoesser, Nicole, Parikh, Hardik I., Sebra, Robert, Kotay, Shireen, Walker, A. Sarah, Sheppard, Anna E.
Publicado 2019

Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches

por George, Sophie, Pankhurst, Louise, Hubbard, Alasdair, Votintseva, Antonia, Stoesser, Nicole, Sheppard, Anna E., Mathers, Amy, Norris, Rachel, Navickaite, Indre, Eaton, Chloe, Iqbal, Zamin, Crook, Derrick W., Phan, Hang T. T.
Publicado 2017

Corrigendum: Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches

por George, Sophie, Pankhurst, Louise, Hubbard, Alasdair, Votintseva, Antonia, Stoesser, Nicole, Sheppard, Anna E., Mathers, Amy, Norris, Rachel, Navickaite, Indre, Eaton, Chloe, Iqbal, Zamin, Crook, Derrick W., Phan, Hang T. T.
Publicado 2018

The Role of fosA in Challenges with Fosfomycin Susceptibility Testing of Multispecies Klebsiella pneumoniae Carbapenemase-Producing Clinical Isolates

por Elliott, Zachary S., Barry, Katie E., Cox, Heather L., Stoesser, Nicole, Carroll, Joanne, Vegesana, Kasi, Kotay, Shireen, Sheppard, Anna E., Wailan, Alex, Crook, Derrick W., Parikh, Hardik, Mathers, Amy J.
Publicado 2019

The Stealthy Superbug: the Role of Asymptomatic Enteric Carriage in Maintaining a Long-Term Hospital Outbreak of ST228 Methicillin-Resistant Staphylococcus aureus

por Senn, Laurence, Clerc, Olivier, Zanetti, Giorgio, Basset, Patrick, Prod’hom, Guy, Gordon, Nicola C., Sheppard, Anna E., Crook, Derrick W., James, Richard, Thorpe, Harry A., Feil, Edward J., Blanc, Dominique S.
Publicado 2016

Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole-Genome Sequencing

por Mathers, Amy J., Stoesser, Nicole, Sheppard, Anna E., Pankhurst, Louise, Giess, Adam, Yeh, Anthony J., Didelot, Xavier, Turner, Stephen D., Sebra, Robert, Kasarskis, Andrew, Peto, Tim, Crook, Derrick, Sifri, Costi D.
Publicado 2015

Chromosomal Integration of the Klebsiella pneumoniae Carbapenemase Gene, bla(KPC), in Klebsiella Species Is Elusive but Not Rare

por Mathers, Amy J., Stoesser, Nicole, Chai, Weidong, Carroll, Joanne, Barry, Katie, Cherunvanky, Anita, Sebra, Robert, Kasarskis, Andrew, Peto, Tim E., Walker, A. Sarah, Sifri, Costi D., Crook, Derrick W., Sheppard, Anna E.
Publicado 2017

Host–Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes

por Masri, Leila, Branca, Antoine, Sheppard, Anna E., Papkou, Andrei, Laehnemann, David, Guenther, Patrick S., Prahl, Swantje, Saebelfeld, Manja, Hollensteiner, Jacqueline, Liesegang, Heiko, Brzuszkiewicz, Elzbieta, Daniel, Rolf, Michiels, Nicolaas K., Schulte, Rebecca D., Kurtz, Joachim, Rosenstiel, Philip, Telschow, Arndt, Bornberg-Bauer, Erich, Schulenburg, Hinrich
Publicado 2015